Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4460 |
Symbol | |
ID | 7972748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4705424 |
End bp | 4705930 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795049 |
Product | peptidoglycan-associated lipoprotein |
Protein accession | YP_002946337 |
Protein GI | 239817427 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.298566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGAACA GCAGCAGCAG CTACCGGATA CTGGCCATCG TCGCCCTCGC AGCAAGCCTT GCCGCTTGCG GAACCGCCGC CACGAGCGGA CGCGAGGACG CCACCTACTA CTACTCGAAC AAGGCAGCCC CGGTGGCGAA GGTGGAACCA CCCCCGCCCG CGCCGGTGCA GAACGGCCCC GCACTGAAGA TCGTGTACTT CGACTTCGAC AAATACGACG TCAAGCCGCA GTACCGCAAC GTGGTGGAAG CGCATGCGAG CTACCTGCGC AACCGTCCCG CCAGCAAGGT GGTGATCGAG GGCCACACCG ACTTGCGCGG CGGCCGCGAA TACAACCTTG CGCTGGGCCA GCGCCGGGCC GAATCCGTGC AGCGCGCGCT CACGCAGCTT GGCGTGCCGG GCGAACGGAT CGAGGCCGTC AGCTGGGGTA TTGAAAAACC CGCGTCGCTC GAAACCACCG AGGAGGGCCA CCAGCTCAAT CGCCGAGCCG AATTCAGCTA CCGCTGA
|
Protein sequence | MKNSSSSYRI LAIVALAASL AACGTAATSG REDATYYYSN KAAPVAKVEP PPPAPVQNGP ALKIVYFDFD KYDVKPQYRN VVEAHASYLR NRPASKVVIE GHTDLRGGRE YNLALGQRRA ESVQRALTQL GVPGERIEAV SWGIEKPASL ETTEEGHQLN RRAEFSYR
|
| |