Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4456 |
Symbol | |
ID | 7972744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4698703 |
End bp | 4700019 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644795045 |
Product | type I secretion membrane fusion protein, HlyD family |
Protein accession | YP_002946333 |
Protein GI | 239817423 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.715639 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAATCAG ATTTGCCGCA GATACTGCAG GACGAGGATC ACAAGCGCGC GGCGCAGACA TCGCCCAAGG GCCGGCGCCG CAAGTGGGTC ATTGGCGGCG CGGTTGCGCT GCTGGCCGCT GTCGGGCTGG GCTTTCCCAT GGAAACCGTG GTGGTGGCAC CGGGCCGCGT GATCCCGTCG GACCGCGTCA AGTCGATCCA GCATCTGGAA GGCGGCATCG TCAGCAGCGT GCTGGTCAAG GAAGGCGACA AGGTCACGCA GGGCCAGCCG CTGGTGGAGA TCGACCTGGG CGGCAGCGGG CTCAATTTCG AGGAACTCAC CGCGCGCTAC GCCGCCACGC AGGCCACCCG CATCCGGCTC ATGGCCGAGA GCCGCGGCCA GCCGCTCAGG CGCGAGAGCT TTGCCGCCGA CATCGACGAG AGCGTGCTCG ACGGCGAGAC CGGCGCCTAC GAGGCGCGCG CGCTCGAGCA GCGCGGCGTG ATGGCCGGTG CGGTTTCGGG CCTGGAGGGC GCGCGCAGCC GGCTGCTCGA GCAGCAGGCC AAGGTCAAGG GCCTGAACGA CCGCCTCGCA TTGATGCAGA AGGAACTCGA GATCTCCGAG CAGCTGCTCA ACGAAAAGCT GGTCGGCCAG GTCGAAGTGC TCGAGAAGCG GCGGCAGGTC GAAAGCGTGC GAAGCGAGCT GGCCGTGGCA CGCCAGGGCG CCATCTCCGC GAGCGCTGCC ATCACCGAGG CGCAGGCCAA GATGGCCGAG GCCGAAGGGC GCTTCCGGCG CCGCGCGTCC GACGAACTGG CCACCGTGGA GCGCCAGTTC GCCAGCCTCA ATGAAGACCT GGCGCGCGCG CGCACGCAGC GCTCCCGCAC CATGGTGAAG GCGCCCGCCG ACGGCATCGT CAAGGGGCTG CGCAGCGCCA GCCCGGGCTG GGTCATCAAG CCCGGCGAAG CCATCATGGA AGTGGTGCCC GACAAGGACG AGATCATGAT CGAGGCGCGC CTGAATCCCA ACGACCGCGG CTTCGTCGAG GTCGGCCAGG CGGCGCGCGT CAAGATCACC GCCTACGACT ACCTGCGCTA TGGCGCGGTC GAAGGCAAGG TCACCCTGGT GGCCGCCGAT GCCGACCGCG ACCCGGCCAT TGCCAACGCG GCGCCGTACT ACCGCATCCT CGTGAGCACC GAGCAGGCCC ACGTGGGCCG CGAAGAGAAC CGCATCACCG CCGGCATGGA GTCCGAGGTC GACCTGAAGG TGGGCACCGA TCCGTTCATC TGGTACATCC TTCGGCCCGT GCTCAAGCTG CGGCGCGAAG CCTTCCGCGA ACCATGA
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Protein sequence | MKSDLPQILQ DEDHKRAAQT SPKGRRRKWV IGGAVALLAA VGLGFPMETV VVAPGRVIPS DRVKSIQHLE GGIVSSVLVK EGDKVTQGQP LVEIDLGGSG LNFEELTARY AATQATRIRL MAESRGQPLR RESFAADIDE SVLDGETGAY EARALEQRGV MAGAVSGLEG ARSRLLEQQA KVKGLNDRLA LMQKELEISE QLLNEKLVGQ VEVLEKRRQV ESVRSELAVA RQGAISASAA ITEAQAKMAE AEGRFRRRAS DELATVERQF ASLNEDLARA RTQRSRTMVK APADGIVKGL RSASPGWVIK PGEAIMEVVP DKDEIMIEAR LNPNDRGFVE VGQAARVKIT AYDYLRYGAV EGKVTLVAAD ADRDPAIANA APYYRILVST EQAHVGREEN RITAGMESEV DLKVGTDPFI WYILRPVLKL RREAFREP
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