Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4404 |
Symbol | |
ID | 7974078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4646870 |
End bp | 4647655 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644794993 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_002946281 |
Protein GI | 239817371 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.385192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATCG AAGGACAAGC CGCACTCGTG ACCGGCGGCG CATCGGGCCT GGGCGAAGCC ACCGCGCGCG AACTCGCGCG GCTGGGCGCC AAGGTGGCGG TGCTCGACCG CAATGCGGAG CTCGCCGCCA AGGTGGCCGC GGAGATCGGC GAAGAATTTG GCGACGGCTG CGCCGTGGCG TGCGTCTGCG ACATCACCGA CACCGAGAGC GTCAATGCCG CGCTCGACAA GGCCGCCGCC GCCCACGGCA CCGCGCGCAT CCTGATGAAC GTGGCGGGCA TCGGCAGCGC CAAGCGCATC GTCGGCAAGG ACGGCAATCC GGCACCGCTC GAAGACTTCG TGCGCGTGGT CAACATCAAC CTGATCGGCG GCTACAACAT GGCGCGCCTC TTTGCGGCAC GCTGCGCCAA GCTGGAGGCA TTGGACAACG GCGAGAAGGG CGTGATGCTC TTCACCGCCT CCGTCGCGGC CTTCGACGGC CAGGTGGGCC AGCAGGCCTA CAGCGCCTCC AAGGGCGGCC TCGTGGGCAT GACGCTGCCG ATGGCGCGCG ACCTCGCGCA GCACGCGATC CGCGTCTGCA CCGTGGCGCC GGGCCTCTTT GCCACGCCGC TTTTGATGGA ACTGCCCGAA GCCGTGCAGC AATCGCTGGC CGCATCGATC CCGTTTCCGC CGCGCCTGGG CAAGCCTTCG GAATTTGCCG AGCTAGCCTG CCACATCGTG ACCAATGGCC ACCTCAACGG CGAAGTCATT CGCCTCGACG GCGCCCTGCG CATGGCGCCG CGCTGA
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Protein sequence | MKIEGQAALV TGGASGLGEA TARELARLGA KVAVLDRNAE LAAKVAAEIG EEFGDGCAVA CVCDITDTES VNAALDKAAA AHGTARILMN VAGIGSAKRI VGKDGNPAPL EDFVRVVNIN LIGGYNMARL FAARCAKLEA LDNGEKGVML FTASVAAFDG QVGQQAYSAS KGGLVGMTLP MARDLAQHAI RVCTVAPGLF ATPLLMELPE AVQQSLAASI PFPPRLGKPS EFAELACHIV TNGHLNGEVI RLDGALRMAP R
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