Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4344 |
Symbol | ipk |
ID | 7970534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4590903 |
End bp | 4591793 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794932 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_002946221 |
Protein GI | 239817311 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.458506 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCGA TCTACGACCT TCCCGCACCG GCCAAGCTCA ACCTCTTCCT GCACATCACC GGCCGGCGCG AAGACGGCTA CCACCTGCTG CAGTCGGTCT TCATGCTGAT CGACTGGTGC GACACGCTGC ACGTCGAACT GCGCAGCGAC GGCCAGCTCA GCCGCGAAGA CCTCACGACC GAACTGCCGC CCGACGACCT CGTGCTGCGC GCGGCGCGGG CGCTGCAGGC GCATGCGGCG CCCGGCCAGG GCGCCCACAT CGGCATCGCC AAGCAGGTGC CGGCGCAGGC CGGCATGGGC GGCGGCTCCT CGGACGCCGC CACCTGCCTC CTGGCGCTGA ACCGCCTGTG GGGGCTGGAC CTGCCGCTCT CGCGCCTGGC CGAGATCGGC GTGCAACTCG GCGCCGACGT GCCGTTCTTC CTGGGCGGGC GCAATGCCTG GGTCGAGGGA ATCGGCGAGA AAATCAGGCC CGTGGACATC CCTTCCGCAC GGTTCGTGGT GGCCAAGCCA CCCCAGGGAC TCGACACCAA GCTAATTTTT TCTGCGCCCG ACCTTCAACG CGCCACTCCT GTTGCTATAA TCTCGGGCTT TGCTGCAGAT AGCGAACAGC TTGAAGCCCC AAACCCCGAA AGCAGCGCTT TCAAGGTTTT CGACTTCGGC CACAACGACC TGCAGCCGGT TGCCCAGCGG CTTTGCCCCG CGGTCACCGA CGCCATCGAA TGGCTCGGCG CCCAAGGATT GAAAGCCCGG ATGACCGGCT CCGGAAGTTC GGTTTTCGCG AAGATGCCGC AAGGGCCGCA GGAAGCGGAA CTGGCAAAAG CCCCACCGGG CTGGCAGGTT CGCCAATGCA GCAACCTGGC CGTTCATCCA CTTTGGGGAT GGGCGACCTG A
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Protein sequence | MKAIYDLPAP AKLNLFLHIT GRREDGYHLL QSVFMLIDWC DTLHVELRSD GQLSREDLTT ELPPDDLVLR AARALQAHAA PGQGAHIGIA KQVPAQAGMG GGSSDAATCL LALNRLWGLD LPLSRLAEIG VQLGADVPFF LGGRNAWVEG IGEKIRPVDI PSARFVVAKP PQGLDTKLIF SAPDLQRATP VAIISGFAAD SEQLEAPNPE SSAFKVFDFG HNDLQPVAQR LCPAVTDAIE WLGAQGLKAR MTGSGSSVFA KMPQGPQEAE LAKAPPGWQV RQCSNLAVHP LWGWAT
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