Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4339 |
Symbol | |
ID | 7970529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4584525 |
End bp | 4585586 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644794927 |
Product | A/G-specific adenine glycosylase |
Protein accession | YP_002946216 |
Protein GI | 239817306 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1194] A/G-specific DNA glycosylase |
TIGRFAM ID | [TIGR01084] A/G-specific adenine glycosylase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00948332 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCGGCTG CGGCCGTGCA GCCGCAGGCG CCGGCCGATT TTGGCGAGCG CGTCGTGGCC TGGCAGCGCA GCCACGGGCG CAGCGCGCTG CCGTGGCAGA ACACGCGGGA TCCCTACCGC GTGTGGCTGT CGGAAGTCAT GCTCCAGCAG ACCCAGGTCT CGACCGTGCT CGGGTACTTC GCGCGCTTTC TCGAACGCTT TCCGACCGTG CGGGCGCTGG CCAACGGCAC CGAGGACGAG GTCTTCGGGC TCTGGAGCGG CCTGGGCTAC TACAGCCGCG CCCGCAACAT GCACCGCTGC GCGCAGGAGG TGGTGGCGCG CTTCGGCGGC GAGTTTCCGC GCACGGCCGC CGAGCTCGAG ACCCTGCCCG GCATCGGCCG CTCCACCTCG GCGGCGATCG CGGCCTTCTG CTTCGGAGAG CGGGTCGCGA TTCTCGACGG CAACGTCAAG CGCGTGCTGA CGCGCGTGCT CGGCTTTGGC GGCGACATGT CCTCGTCGGC GCAGGAACGC GCACTGTGGG ACCAGGCCAC CCAGCTGCTG CCGCCGGCCG AGCAGAAGGA AGCGATCGCG AGCTACACGC AAGGCGTGAT GGACCTGGGC GCCACGGTCT GCCTGCCGCG CAAGCCGAGC TGCATGATCT GTCCGCTGAA CAAGGCATGC GTGGGGCTGC GCGAGGGCCA GCCCGAGCGC TATCCGGTCA AGACGCGCAA GCTCAAGCGC AGCGCCCAGT CGCTCTGGGC GCTGCTCGCG CGCGATGCGC AAGGCCGCGT CTGGCTCGAG AAGCGGTCGG CCAAGGGCAT CTGGGCCGGG CTCTACTGCC TGCCCGTGTT CGATAGCCGA GAAGAGTTGC TGGCCGCGCT GCCGCCGGCG GCGCTGGCCG GCGCACAGGA CCTGCCGCCT TTCGTGCATG TGCTGACCCA CAAGGACCTG CACCTGCACC CGGTGCTGCT CCAGGGCAGC CAGCCGAAAG GCGATGCGGC GCGCTGGGTG GATGCGCAGG AGTGGGGCCG GCTGGGATTG CCGGCGCCGA TGCGCAAGCT GCTCGAGAGC AGCGCGGGTT AG
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Protein sequence | MPAAAVQPQA PADFGERVVA WQRSHGRSAL PWQNTRDPYR VWLSEVMLQQ TQVSTVLGYF ARFLERFPTV RALANGTEDE VFGLWSGLGY YSRARNMHRC AQEVVARFGG EFPRTAAELE TLPGIGRSTS AAIAAFCFGE RVAILDGNVK RVLTRVLGFG GDMSSSAQER ALWDQATQLL PPAEQKEAIA SYTQGVMDLG ATVCLPRKPS CMICPLNKAC VGLREGQPER YPVKTRKLKR SAQSLWALLA RDAQGRVWLE KRSAKGIWAG LYCLPVFDSR EELLAALPPA ALAGAQDLPP FVHVLTHKDL HLHPVLLQGS QPKGDAARWV DAQEWGRLGL PAPMRKLLES SAG
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