| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4308 |
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| Symbol | |
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| ID | 7970495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4551437 |
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| End bp | 4552216 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794894 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946186 |
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| Protein GI | 239817276 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAGA CAAATCCAAC CGCGCCTGCC TCGTTGCAAG GCCTCGTCGC CGTCGTCACT
GGGGGGGCGA AGGGCATCGG CCTTGGCATC GCCCGCGAGC TTGCGCAGGC CGGCTGCCGC
ATCGCGCTGT GGGACTTCGA CGACGAAGCC CTGCAAGCGG CCCAGCGCGG CCTTGCGAGC
GAGGGGTTCG ACGTGAAGAC CTTCAAGGTC GACGTGAGCT CCGTGGAGCA GGTGGAGTCG
ACGGTGGCCC AACTGCTGGC ATCCCATGCC CGCATCGACA TCCTGGTCAA CAACGCCGGC
ATCGGTGGAG ACAAGCTTGT TTCCAAGATG GACCTGGCGT TCTGGAGCCG CGTGATCGAG
GTCAACCTCC ATTCGCAATT CATTTGCTCC AAGGCGGTCT TGTCCCAGAT GGCGGAAAAC
CGGTTCGGAC GCATCATCAA CATCGGTTCG CGTGCCTGGC TGGGCAATCG CGGCCAGGCG
GCCTATTCCG CTTCCAAAGG GGCCGTGGTG AGCCTGACCC GCTCGCTGGC GCTGGAATAT
GCGCGCAAGG GCATCACCGT GAATGCCATC GCCCCGGGCA TCGTCGAGAC GCCGCTGTTT
GAAACGCTCA CCGAAGAGGT CAGGCAGGGT CTTCACAAGA CTGTGCCGAT GGAGCGCATC
GGCCAGCCGG AAGACATCGG TCGTGCCGTT CGATTCTTCG CGGAGCCAGG CTCCAGCTAC
GTCACGGGGC AGCTGCTTTA CGTTTGCGGC GGACGCAGTC TCAGCAGTCC GTCGGTGTAG
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| Protein sequence | MNQTNPTAPA SLQGLVAVVT GGAKGIGLGI ARELAQAGCR IALWDFDDEA LQAAQRGLAS
EGFDVKTFKV DVSSVEQVES TVAQLLASHA RIDILVNNAG IGGDKLVSKM DLAFWSRVIE
VNLHSQFICS KAVLSQMAEN RFGRIINIGS RAWLGNRGQA AYSASKGAVV SLTRSLALEY
ARKGITVNAI APGIVETPLF ETLTEEVRQG LHKTVPMERI GQPEDIGRAV RFFAEPGSSY
VTGQLLYVCG GRSLSSPSV
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