| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4252 |
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| Symbol | |
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| ID | 7971336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4492589 |
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| End bp | 4493746 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794839 |
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| Product | porin |
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| Protein accession | YP_002946131 |
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| Protein GI | 239817221 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.73857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAT CCCTCACGGC ACTCGCCGCG CTGGCCGTTG CCGGCCTGGC CTCTGCCCAA
TCGTCCGTCA CGTTGTTCGG CGTCATCGAT GCCGGCGTGA CCTACCAGTC GGCCACCTCG
CGCGACGCGG CCACAGGCCT TGCCTCCAAG CAAAGCAAGT GGAGCCTCGC CAACTCCGGC
TACAACTCCA GCCGCATCGG CTTCCGTGGC ACGGAAGACC TGGGCGGCGG GCTGGCCGCC
AGCTTCTGGC TCGAAGCGCC GATCACCAAC GATGACGGCG CCACCGGCAT CTCCACCTTC
AACCGCCGCT CCACCGTGAG CCTGTCGGGC GGCTTCGGCG AACTGCGGCT GGGCCGCGAC
TACACCGCCA CCTTCTGGAA CGACACGGTC TTCGATCCGT TCGGCACCAA CGGCTCGGGA
GCCAGCGTGA TCAACACCGT GAGCGGCAGC ACCGGCCTGA ACAACGCCAA CTACGTGCGT
GCGAGCAACA TGGTCGGCTA CTTCCTGCCG CCCAACCTCG GCGGCTTCTA CGGCCAGCTG
CAATACAGCC TGAACGAGAA CACCCGGACC AGCGCCACCG ACCTCACGGC CGCCACCAGC
AGCAGCGCGG GCCGCTACGC GGGTGGGCGC TTCGGCTATG CGAACGGGCC GCTCGACGTG
GCACTGGCCG TGGGCGAGAA CGTCGCGGTG GACACCACCT CGCTGACCCG CAAGGTGCAG
ACCATCAACC TCGGCGCGTC GTACGACTTC GGCCCGGTCA AGCTGTTCGG CGAGCTGTCG
AACGTGAAGA ACAAGTTCGA CCTGGCCGTC GGCAACAGCC ACGACAGCTA CAACGGCTAC
CTGATCGGCG CGAGCATGCC GGTGGGGGCG GGCGTGATCC GCGCGTCGTA CTCGACCGTG
CGCTACGACG AAGGCGCCGC GGGCATCACG GGCGAGGATC CGCGCGCGCA GAAGCTGGCC
ATCGGCTATG TGCACAACCT CTCGAAGCGC ACGGCCCTGT ACGCGACCGT GGCCCGCGTG
AACAACCGCA ACGATGCGGC CTACACCGGC AGCCTGAGCG CCGCGAGCAC CACCGGCTAC
GGCAGCGCCG GCGTCAGCTA CACGGGCCTG CCGCGCTCGT CCACGGGCTA CGACTTCGGC
ATCCGGCACG CCTTCTGA
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| Protein sequence | MKKSLTALAA LAVAGLASAQ SSVTLFGVID AGVTYQSATS RDAATGLASK QSKWSLANSG
YNSSRIGFRG TEDLGGGLAA SFWLEAPITN DDGATGISTF NRRSTVSLSG GFGELRLGRD
YTATFWNDTV FDPFGTNGSG ASVINTVSGS TGLNNANYVR ASNMVGYFLP PNLGGFYGQL
QYSLNENTRT SATDLTAATS SSAGRYAGGR FGYANGPLDV ALAVGENVAV DTTSLTRKVQ
TINLGASYDF GPVKLFGELS NVKNKFDLAV GNSHDSYNGY LIGASMPVGA GVIRASYSTV
RYDEGAAGIT GEDPRAQKLA IGYVHNLSKR TALYATVARV NNRNDAAYTG SLSAASTTGY
GSAGVSYTGL PRSSTGYDFG IRHAF
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