| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4231 |
|---|
| Symbol | |
|---|
| ID | 7971315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4471553 |
|---|
| End bp | 4472782 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794818 |
|---|
| Product | arginine biosynthesis bifunctional protein ArgJ |
|---|
| Protein accession | YP_002946110 |
|---|
| Protein GI | 239817200 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1364] N-acetylglutamate synthase (N-acetylornithine aminotransferase) |
|---|
| TIGRFAM ID | [TIGR00120] glutamate N-acetyltransferase/amino-acid acetyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0303119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTGA ACCTGTCCGC CCCTGATCCT GCCGCCTTGT TCGCGGTGCC CGGCGTCCGC
ATCGGCGTGG CCGAAGCGGG TGTGCGCAAG GCCAACCGCA AGGACCTGAC CGTCGTGCTG
ATCGACGAAG GTTCCGCGGT CGGCGGGGTG TTCACCCAGA ACCGTTTCTG CGCGGCGCCG
GTGCAGGTCT GCCGCGACCA CCTGGCGGCC GGCTACGGCA TCCGCGCGAT GGTCATCAAC
ACCGGCAACG CCAACGCCGG CACCGGCGAA GACGGCCTGA TGCGCACGCG CTCCACCTGC
ATTGCGCTCG CGCGCCAGCT GGAGATCGCG CCCGAGCAGA TCCTGCCGTT CTCCACCGGC
GTGATCATGG AGCCGCTGCC GGTGGACCGC ATCGAGGCCG GCCTGCCCGC CGCGCTGGCC
GACGCGGCGG AGAACCACTG GACGCGCGCC GCCGAAGGCA TCATGACCAC CGACACGATC
CCCAAGGCGT TCAGCCAGCG GGTCCAGGTC GGCGGCGCCA CCGTCACCAT CACCGGCATC
AGCAAGGGCG CCGGCATGAT CCGCCCGAAC ATGGCGACCA TGCTGGGCTT CATGGCGACC
GACGCGAAGA TCGATCCCTC GCTGATCCAG CCGCTGGCCC GGCGCCTGGC CGACGCCTCG
TTCAACCGCG TGACCATCGA CGGCGATACC TCGACCAACG ATTCCTTCGT GGTCATCGCC
ACCCAGAAGG CCGCGCACGC CGCCATCACC TCGCTCGATT CGCCCGAGGG CAAGGCCCTG
GTCGATGCCA TGCAGAACGT CGCGCGCCTG CTTGCGCAGG CCATCGTGCG CGATGGCGAG
GGTGCCACCA AGTTCATCAC CATCCAGGTC GAAGGCGGCC GCAATGCCGC CGAGTGCAAG
CAGGTGGCCT ATGCCGTGGC GCATTCGCCG CTGGTCAAGA CGGCCTTCTA TGCGAGCGAC
CCGAACCTCG GCCGCATCCT CGCGGCCGTC GGCTACGCGG GCATCGAGGA CCTCGACCAG
ACCGGCATCG ACCTGTTCCT GGACGACGTG CACGTGGCCG TCAAGGGCGG GCGCAACCCG
GCCTACCGCG AGGAAGACGG CCAGCGCGTG ATGAAGCAGA GCGAGATCAC GGTGCGCATC
GGCCTGGGCC GCGGCAATGC CAGCGAAACC GTGTGGACCT GCGACTTCAG CCACGAATAC
GTGACCATCA ACGCCGACTA CAGGTCATGA
|
|---|
| Protein sequence | MPVNLSAPDP AALFAVPGVR IGVAEAGVRK ANRKDLTVVL IDEGSAVGGV FTQNRFCAAP
VQVCRDHLAA GYGIRAMVIN TGNANAGTGE DGLMRTRSTC IALARQLEIA PEQILPFSTG
VIMEPLPVDR IEAGLPAALA DAAENHWTRA AEGIMTTDTI PKAFSQRVQV GGATVTITGI
SKGAGMIRPN MATMLGFMAT DAKIDPSLIQ PLARRLADAS FNRVTIDGDT STNDSFVVIA
TQKAAHAAIT SLDSPEGKAL VDAMQNVARL LAQAIVRDGE GATKFITIQV EGGRNAAECK
QVAYAVAHSP LVKTAFYASD PNLGRILAAV GYAGIEDLDQ TGIDLFLDDV HVAVKGGRNP
AYREEDGQRV MKQSEITVRI GLGRGNASET VWTCDFSHEY VTINADYRS
|
|---|
| |