| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4221 |
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| Symbol | |
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| ID | 7971305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4461735 |
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| End bp | 4462964 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794808 |
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| Product | type II secretion system protein |
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| Protein accession | YP_002946100 |
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| Protein GI | 239817190 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.979203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACAG TGGCATCCAC CCGCACCTCG AACACGCTCA AGGAATTTGT CTACGAGTGG
GAGGGCAAGG ACCGCAACGG CAAGCTGGTG CGCGGCGAAC TCCGGGCCGC CGGCGAGAAC
CAGGTGCAGG CCGCCCTGCG GCGCCAGGGC GTCCTGGCGT CCAAGATCAA GAAGCGCCGC
ATGCGCTCGG GCAAGAGCAT CAAGCCCAAG GACATCGCGA TCTTCACGCG CCAGCTGGCA
ACCATGATGA AGGCCGGCGT GCCGCTGCTG CAGTCCTTCG ACATCGTGGG CCGCGGCAAT
GCGAACCCGA GCGTGGCCAA GCTGCTCAAC GACATCCGCA GCGACGTGGA AACCGGCACC
TCGCTGTCGT CCGCCTTCCG CAAGTTTCCG AAGTACTTCG ACAACCTCTA CTGCAACCTG
GTGGAAGCCG GCGAAGCGGC CGGTATCCTG GAAGACCTGC TGGACCGCCT GGCCACCTAC
ATGGAAAAGA CTGAGGCGAT CAAGTCGAAG ATCAAGTCGG CGCTGATGTA TCCCACTTCC
GTGGTGGTGG TCGCGTTCGT GGTGGTGGCC ATCATCATGA TCTTCGTGAT TCCGGCCTTC
AAGCAGGTGT TCACCTCGTT CGGCGCCGAC CTGCCCGCGC CCACGCTGTT CGTGATGGCC
ATGAGCGAAT TCTTCGTCTC CTACTGGTGG CTGATCTTCG GCGTGGTCGG CGGCGGCACC
TACTTCTTCC TGCAGGCCTG GAAGCGCAAC GAACGCGTGC AGCGGGTCAT GGACCGCGCG
CTGCTGCGCG TGCCGATCTT CGGTACGCTG ATCGAGAAGT CGTGCGTGGC CCGCTGGACC
CGCACCCTTG CGACCATGTT CGCGGCCGGC GTTCCGCTGG TCGAGGCGCT CGACTCGGTG
GGCGGCGCCT CGGGCAACAC CGTCTACGGC GACGCCACGG CCAAGATCCA GCAGGAAGTC
TCGACCGGCA CCAGCCTCAC GACGGCCATG ACCAACGTCA ACCTGTTCCC CTCGATGGTG
ATCCAGATGA CGGCCATCGG CGAGGAGTCC GGCTCGATCG ACCACATGCT CGGCAAGGCC
GCCGACTTCT ACGAGTCCGA GGTGGACGAC ATGGTGGCCG GCCTCTCGAG CCTGATGGAG
CCCATCATCA TCGTGTTCCT GGGCGTGATC ATCGGCGGCA TCGTGGTGTC GATGTACCTG
CCGATCTTCA AGTTGGGCCA GGTCGTTTGA
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| Protein sequence | MATVASTRTS NTLKEFVYEW EGKDRNGKLV RGELRAAGEN QVQAALRRQG VLASKIKKRR
MRSGKSIKPK DIAIFTRQLA TMMKAGVPLL QSFDIVGRGN ANPSVAKLLN DIRSDVETGT
SLSSAFRKFP KYFDNLYCNL VEAGEAAGIL EDLLDRLATY MEKTEAIKSK IKSALMYPTS
VVVVAFVVVA IIMIFVIPAF KQVFTSFGAD LPAPTLFVMA MSEFFVSYWW LIFGVVGGGT
YFFLQAWKRN ERVQRVMDRA LLRVPIFGTL IEKSCVARWT RTLATMFAAG VPLVEALDSV
GGASGNTVYG DATAKIQQEV STGTSLTTAM TNVNLFPSMV IQMTAIGEES GSIDHMLGKA
ADFYESEVDD MVAGLSSLME PIIIVFLGVI IGGIVVSMYL PIFKLGQVV
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