| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4219 |
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| Symbol | |
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| ID | 7971302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4458695 |
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| End bp | 4459732 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794805 |
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| Product | Trans-hexaprenyltranstransferase |
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| Protein accession | YP_002946098 |
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| Protein GI | 239817188 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.830845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCGCTGT CACTTTCGCA TTCAGACGCG CCGCGCGCAA ACGCCTTGCC AGTCCACGCC
GCCGATACCT CCCCCACCGC CACCGTGCTG GATTTGATCG CCGGCGACAT GGTCGAAGTC
GACCGTGTGA TCGCGCAGCG CCTCGACACG GGCGTGCCCC TGGTCAGCCA AGTGTCGAAG
TACATCATCT CCGCGGGCGG CAAACGCCTG CGCCCGGCGC TGCTGCTGCT CATGTCCGGC
GCGCTCGGCT ACACGGGCGA GCAGCGCTTC AACCTGGCGG CGGTGGTGGA GTTCATCCAC
ACAGCCACGC TGCTGCACGA CGACGTGGTC GACGAATCGA CCCTGCGGCG CGGGCGCCCG
ACGGCCAACG AATCGTTCGG CAACCCGGCC AGCGTGCTGG TCGGCGACTT CCTCTATTCG
CGCGCCTTCC AGATGATGTT GGATGCAAAC AACATGCGCA TCATGCAGAT CCTGGCCGAG
GCGACCAACG TGATCGCGGA AGGCGAAGTG CTCCAGCTGA TGAACATGCA CGACGCGACG
CTGGACGAAT CCGCCTACCT GCGCGTGATC CGCTCCAAGA CCGCCAAGCT GTTCGAGGCC
AGCACACGGC TCGCCGCCGT GCTGGCGGGC GCCACGCCCG AAGTCGAGGA AGCCTGCGCC
ACCTACGGCC AGGCCCTGGG CACGGCCTTC CAGGTGATCG ACGACGTGCT CGACTACGCC
GGCGATGCGC ACGAAACGGG CAAGAACGTG GGCGACGACC TGCGCGAAGG CAAGACCACG
CTGCCGCTGA TCTTCGCCAT GCGTCGCGGC AGCCCCGCGC AGGCGACGCT GGTGCGTGCG
GCCATCGAGG CCGGCGACAC CGCCCAGCTG GGCAAGATCG TCGAAATCGT CCACGCCACG
GGCGCCCTGG AAGCCTCGCG CGCCGCCGCA GCCGACGAGG CAAAACGCGC GATTCACGCA
TTGCGCGACT TCCCGTCCAA TTTGCATGCC GACGGTTTGC TACAATTGGC GGCTCAGTTG
CTTGAGCGAC GTGCCTGA
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| Protein sequence | MPLSLSHSDA PRANALPVHA ADTSPTATVL DLIAGDMVEV DRVIAQRLDT GVPLVSQVSK
YIISAGGKRL RPALLLLMSG ALGYTGEQRF NLAAVVEFIH TATLLHDDVV DESTLRRGRP
TANESFGNPA SVLVGDFLYS RAFQMMLDAN NMRIMQILAE ATNVIAEGEV LQLMNMHDAT
LDESAYLRVI RSKTAKLFEA STRLAAVLAG ATPEVEEACA TYGQALGTAF QVIDDVLDYA
GDAHETGKNV GDDLREGKTT LPLIFAMRRG SPAQATLVRA AIEAGDTAQL GKIVEIVHAT
GALEASRAAA ADEAKRAIHA LRDFPSNLHA DGLLQLAAQL LERRA
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