| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4212 |
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| Symbol | |
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| ID | 7971295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4452457 |
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| End bp | 4454202 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794798 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_002946091 |
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| Protein GI | 239817181 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCTT CCCGATTTTT TGTCTCCACC CTCAAGGAAG CGCCCGCTGA CGCCGAGGTC
GCGAGCCATC GGCTCATGAT GCGCGCGGGC ATGATCAAGA AGCTCGGCAC GGGCATCTAC
ACCTACATGC CGATGGGGCT GCGCGTGATC CGCAAGGTCG AGGCGATCGT GCGCGAGGAA
ATGAACCGCG CCGGCGCGGT CGAGCTCACG ATGCCCGTGG TGCAGCCGGC CGAGTTCTGG
CAGGAGACCG GCCGCTTCGA CAAGATGGGC CCCGAGCTGT TGCGCATCAA GGACCGGCAC
GACCGCGACT TCGTGGTCCA GCCCACCAGC GAAGAGGTGG TGACCGACAT CGCGCGCCAG
GAAATCCGCA GCTACAAGCA GCTGCCGAAG AATTTCTACC AGATCCAGAC CAAGTTCCGC
GACGAGCGCC GTCCGCGCTT CGGCCTGATG CGCGGGCGCG AATTCATCAT GAAGGACGCC
TACAGCTTCG ACCGCGACCT GGATGCCGCC AAGGCCAGCT ACCAGGCCAT GGCCGATGCC
TACCGCCGCA TCTTCGACCG CTTCGGCCTG CGCTACCGCG CCGTGGCGGC CGACAGCGGC
GCCATCGGCG GCGACCTGAG CGAAGAGTTC CAGGTGATTG CCGCCACCGG CGAAGACGCC
ATCGTCTACT GCCCCGGCAG CGACTACGCA GCCAACATGG AAAAGGCCGA GGCGCTCGCT
CCGGCCGGCC CGCGCCCGGC AGCGGCCAAG GCGCTCGAGA AGACGCCCAC CCCGGGCAAG
AGCACCTGCG CCGACGTGGC CGAACTGCTC GGCGTGCCGC TCTCGACCAC CGTCAAGTCG
CTGGTGCTGG CAACGGACAT CCTCGACGAG GCCGGCAACC CCAAGGGTTC GCAGGTCTGG
CTGCTGCTCC TGCGCGGCGA CCACGACATG AACGAGATCA AGGTCGGCAA GGTGCCGGGC
CTGGACAAGG GCTTCCGCTT CGCGACGCTG GCCGAGATCG ACGACCACTT CGGCTGCAAG
CCCGGCTACC TCGGCCCGCT GAACCTCAAG AAGCCCGTCA GGCTCGTGGC CGACCGCGAG
GTGATGGTCA TGGCCGACTG GATCACCGGC GCCAACGAGG TCGACTTCCA CATGACCGGC
GTCAACTGGG GCCGCGACCT GCCCGAGCCC GAACTGGTGG CCGACCTGCG CAACGTGGTG
GCGGGCGACG CCTCGCCCGA CGGCAAGGGC GTGCTCGCGA TCGAGCGCGG CATCGAGGTG
GGCCACGTGT TCGTGCTCGG CACCAAGTAC AGCAAGGACA TGAACGCCAC CTACCTGGAC
GAAGCCGGCA AGCCGCAGTT CCTCGAGATG GGCTGCTACG GCATCGGCAT CACGCGCCTG
CCGGCCGCCG CCATCGAGCA GAACCACGAC GAGCGCGGCA TCATCTGGCC CGACGCGCTG
GCGCCGTTCA CGGTGGTGGT CTGCCCGATC GGCATGGATC GCAGCCCCGA GGTCAAGGTG
GCGGCCGAAG CGCTGTACGA GCAGCTGCTC GCGGCCGGCG TCGACGTGCT GCTGGACGAC
CGCGGCGAGC GCCCGGGCGC GATGTTCGCC GATTGGGAAC TGATCGGCGT GCCGCACCGC
GTGGTCATTT CCGACCGCGG CCTGAAGGAA GGCCAGCTCG AATACCAGCA CCGCCGCGAC
ACGGCGGCCA CCAAGGTGCC TGCCGCGGGC ATCGCCGAAT TCATCGCCGG CAAGTTCGCG
CAATGA
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| Protein sequence | MKASRFFVST LKEAPADAEV ASHRLMMRAG MIKKLGTGIY TYMPMGLRVI RKVEAIVREE
MNRAGAVELT MPVVQPAEFW QETGRFDKMG PELLRIKDRH DRDFVVQPTS EEVVTDIARQ
EIRSYKQLPK NFYQIQTKFR DERRPRFGLM RGREFIMKDA YSFDRDLDAA KASYQAMADA
YRRIFDRFGL RYRAVAADSG AIGGDLSEEF QVIAATGEDA IVYCPGSDYA ANMEKAEALA
PAGPRPAAAK ALEKTPTPGK STCADVAELL GVPLSTTVKS LVLATDILDE AGNPKGSQVW
LLLLRGDHDM NEIKVGKVPG LDKGFRFATL AEIDDHFGCK PGYLGPLNLK KPVRLVADRE
VMVMADWITG ANEVDFHMTG VNWGRDLPEP ELVADLRNVV AGDASPDGKG VLAIERGIEV
GHVFVLGTKY SKDMNATYLD EAGKPQFLEM GCYGIGITRL PAAAIEQNHD ERGIIWPDAL
APFTVVVCPI GMDRSPEVKV AAEALYEQLL AAGVDVLLDD RGERPGAMFA DWELIGVPHR
VVISDRGLKE GQLEYQHRRD TAATKVPAAG IAEFIAGKFA Q
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