Gene Vapar_4184 details

Gene Information

• Locus tag: Vapar_4184
• ID: 7971921
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4425699
• End bp: 4427741
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644794770
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_002946063
• Protein GI: 239817153
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.12793
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGCCG CAGCCACGGA CCCGTCCCAG CCAACGCGCC CCTTTGTCTC GCTGGCGCGC 
ACGCTCACCG TCAGGGCCGC CCTTGCCATT CTTCTGGTGA CGGGGCTGCT GCTCGCGGCG 
TTCTATGCGA TCGGCTCCGC GCAGCAGCAG CGCAGCGCCG CGCAATACGC CAATGCCAAG 
GCCGAAGCGA TTGCGCGGTC GCTCGACATC TTCGACCGCA CCATGCAGCT GACCGCGGAG 
AACGCCTACG GCGTCTTCCG GCGCCAGTTC TCGGCCACCT TCGCTGTCGA AGATGCGGCC 
CAAGGCATCG TGAGCAGCTA CGGAACGCAG ATCAATGGCG CGAGCACGAG CGAGGTGGAC 
GCCTTCGCGC GGGATTTTCC CGGCGCCAAC GCCACGGTGT TCGTGGCGCA GGGCGAAGAC 
TTCCGCCGCA TCACGACCTC GGTCAAGAAG GAGAACGGCG AGCGTGCCAT CGGGACGCTG 
CTCGACCGCA AGAGCGCAGC GTATCCGGTG CTGCGCTCGG GCAAGAAATT CATCGGCCGC 
GTCATGCTGT TCGGGCGCCC CTTCATGACG GTCTACGAGC CGGTGCGCGA CGCGGCGGAC 
CAGGTCGTCG CCGTGCTCTA CATCGGCCTG GACATCTCGC AGCAGCAGGC CTCCTTCGGC 
GAAGCAGTGG GCCAGAGCCG GATCTTCGAC ACCGGCGGGC TCTACATCGT CAACCCGGGC 
GCAGACCCCG CCGCTGCCAC GCTCGTGTTC CATCCGTCTG CGGCCGGCAA GAAGCTGTCC 
GAGGTTGTGC AGGGCGCGGA TGCGGCCGGT TGGCTCGCCC GCCTGAAGGG CGAGGACGCC 
GCGTGGATCG AGGATGCACC CGCGGTGCTG CGGCCGGCGC AGCCGGGGCA GCGCTATGCG 
TCCGTGAGCA GGAGCGATGC GACCGGCTGG CTGGTGGTGG CGGAGATGCC CGCCTCGGAA 
GTGATGGCCG ATCTCTACCG CGAGATGCGC CTGCTCGGCG GCGTCATTGC GCTGGCCGCG 
CTGCTGCTGG GCGCGGGGCT GATCGTCTTC ATCCGGCGCA TGGTGCGGCC GCTTCGCGTA 
CTGAGCGAGC ATGTGCAGGC CATCGGCCAA GGGGATCTGT CGCGGCCGCT GTCGTCCGAC 
CGCCGCGACG AGATCGGCGT CATCACGCGG GCCGTCGAGT CGATGCGCGG CGGCCTTGCC 
AAGGTGGTGG GCGGCGTGCG CCAGGGCACC GATGCGATCG CGACCGCCTC GGGCGAGATT 
GCCGCGGGCA ACCAGGACCT TTCGTCGCGT ACCGAGGAGC AGGCCAGCTC GCTCGAGCAG 
ACCGCGGCGT CGATGGAAGA GCTGACCTCC ACGGTCAAGC AGAACGCGGA CAACGCGCGC 
CAAGCGAACC AGCTGGCCTT GTCTGCCTCC GAGGTGGCCG TCAAGGGCGG CAATGTCGTG 
GGCCAGGTGG TCGACACCAT GGCCTCGATC AATGCGTCCT CGAAGAAGAT CGTCGACATC 
ATCGGCGTGA TCGATGGCAT TGCGTTCCAG ACCAATATCC TTGCGCTCAA TGCCGCGGTG 
GAAGCGGCAC GTGCCGGCGA GCAGGGCCGC GGCTTCGCAG TGGTCGCCTC CGAGGTTCGC 
AACCTGGCCC AGCGCTCGGG CGCAGCAGCA AAAGAAATCA AGGGCCTGAT CGACGACTCC 
GTCGGCAAGG TCGACATGGG CAGTGCGCTG GTCGGCGAAG CCGGCAAGAC CATGGCCGAG 
ATCGTGGGCA GCGTGAAGCG CGTGACCGAC ATCATCGGAG AGATCACGGC CGCGAGCCAG 
GAGCAGAGCA CGGGCATCGA GCAGGTGAAC CAGGCCATCG CGCAGATGGA CCAGGTCACG 
CAGCAGAACG CGGCGCTGGT CGAAGAAGCC GCCGCCGCGG CGCAATCGAT GCAGGAGCAG 
GCCGCGAGCC TCGTGCAGGC CGTGAGCGTG TTCAAGCTGG ACGGCCCGCC GCGCCAGGCC 
GCAACCGCCT TGCGGCAAAC CAGCCCTGTC CATTACCACG CGCCCGAGGT GGCGCCCATC 
TGA 

 

Protein sequence

MKAAATDPSQ PTRPFVSLAR TLTVRAALAI LLVTGLLLAA FYAIGSAQQQ RSAAQYANAK 
AEAIARSLDI FDRTMQLTAE NAYGVFRRQF SATFAVEDAA QGIVSSYGTQ INGASTSEVD 
AFARDFPGAN ATVFVAQGED FRRITTSVKK ENGERAIGTL LDRKSAAYPV LRSGKKFIGR 
VMLFGRPFMT VYEPVRDAAD QVVAVLYIGL DISQQQASFG EAVGQSRIFD TGGLYIVNPG 
ADPAAATLVF HPSAAGKKLS EVVQGADAAG WLARLKGEDA AWIEDAPAVL RPAQPGQRYA 
SVSRSDATGW LVVAEMPASE VMADLYREMR LLGGVIALAA LLLGAGLIVF IRRMVRPLRV 
LSEHVQAIGQ GDLSRPLSSD RRDEIGVITR AVESMRGGLA KVVGGVRQGT DAIATASGEI 
AAGNQDLSSR TEEQASSLEQ TAASMEELTS TVKQNADNAR QANQLALSAS EVAVKGGNVV 
GQVVDTMASI NASSKKIVDI IGVIDGIAFQ TNILALNAAV EAARAGEQGR GFAVVASEVR 
NLAQRSGAAA KEIKGLIDDS VGKVDMGSAL VGEAGKTMAE IVGSVKRVTD IIGEITAASQ 
EQSTGIEQVN QAIAQMDQVT QQNAALVEEA AAAAQSMQEQ AASLVQAVSV FKLDGPPRQA 
ATALRQTSPV HYHAPEVAPI