| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4153 |
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| Symbol | |
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| ID | 7971890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4395832 |
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| End bp | 4396485 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794739 |
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| Product | CheD, stimulates methylation of MCP protein |
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| Protein accession | YP_002946032 |
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| Protein GI | 239817122 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.340514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGA ATGCGAACAC CCATCTTGCT GCGCAGAAGG GCTTCCTGCC CGCGGCCGTG
CCGGGTTCGG TGGCCACGCA TCACTACTTC GACCGCGACT TCGATTGCGC CGCGGTCAAG
CTGCTGCCTG CGGAGTACTA CGTGACCGAT GCCGGTGTGC TGTTGACCAC GGTGCTGGGC
TCCTGCGTGG CGGCCTGCAT CACCGACGTG GAGGCGGGCG TGGCGGGCAT GAACCACTTC
ATGCTGCCCG ACGACGCCGA GGCGGGCTCG CGCGAGCAGG CCGGCGCCAT GCGCTACGGC
GCGCATGCGA TGGACGTGCT GATCGCCGAG CTGCTGCGCG CGGGCGCGCG CCGCGAGCGG
CTCAGGGCCA AGGTCTTTGG CGGCGCCGCG GTGCTGGCGA ACATGACCAT GCTCAACATC
GGCGGGCGCA ATGCCGACTT TGTCCTGCGC TACCTCGAGA AGCAGCGCAT CGCCATTGCC
GCGCAGGACC TGCGCGGCCT GCATGCGCGC CGCGTGTGCC TGCTGCCGGA GAGCGGCAAG
GCGGTGGTGC GCAAGCTGCG TGCGCCGGTC GACATCCAGG CGGTCCAGCG CGACGAGGGC
GAGCTGCTGC GCAAATGGTC CGCCGCATAT GGCAAGGGAA GCTGGATCGC ATGA
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| Protein sequence | MNTNANTHLA AQKGFLPAAV PGSVATHHYF DRDFDCAAVK LLPAEYYVTD AGVLLTTVLG
SCVAACITDV EAGVAGMNHF MLPDDAEAGS REQAGAMRYG AHAMDVLIAE LLRAGARRER
LRAKVFGGAA VLANMTMLNI GGRNADFVLR YLEKQRIAIA AQDLRGLHAR RVCLLPESGK
AVVRKLRAPV DIQAVQRDEG ELLRKWSAAY GKGSWIA
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