| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4144 |
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| Symbol | |
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| ID | 7971881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4389256 |
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| End bp | 4389987 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794730 |
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| Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
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| Protein accession | YP_002946023 |
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| Protein GI | 239817113 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.216069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTACACCG CGCAGGGAAC CTTTGAGAAG TCCCACCTGC TGAAGCAGCA CCAGCCGATG
GTGCGCCGCA TGGCGCTCCA GATGCTGGCC AAGCTGCCCG CCAGCGTGGA GCTCGACGAC
CTGATCCAGG CCGGCATGAT CGGCCTGCTC GACGCTTCCA CGCGCTACCA GGACAACCGC
GGCGCTCAGT TCGAAACCTT CGCCAGCCAG CGCATCCGCG GCGCCATGCT TGACGAACTG
CGCGCGAGCG ACTGGGGCTC GCGCGGCCTG CGCCAGTCGG CGCGCAAGGT CGAACAGGCC
ATCCAGGCGC TGGAGCACCG GCTCGGCCGC TCCGCCAGCG AAGGAGAGAT CGCCCGGGAA
CTGAAGATGG AGCTGGACGA CTACCAGTCG CTGCTGCAGG ACATCCAGGG CTGCCAGCTG
CTCTACGTGG AAGACTTCGC ACAGGACGGT GAGGCCGAAA ACCCCTGGCT CGAGCGCCAG
GCGCAGGCCG ACGCCCGGCT TGGCGGCGAC GATCCGCTCG CGCAGCTGCT CGAAGCGGGT
TTCCGCCATG AGCTTGTCGA TGCGATTGCC GCGCTGCCCG AGCGCGACCA GCTGCTGCTG
AACCTGTACT ACGAGGAAGA GCTGAACCTG CGAGAGATCG GCGCGATCCT GGAAGTGACC
CAGTCGCGCG TGTGCCAGCT GCACAGCCAG GCGATCAGCA GGTTGCGGGC GAAGTTGAAG
GATTCGTTTT AG
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| Protein sequence | MYTAQGTFEK SHLLKQHQPM VRRMALQMLA KLPASVELDD LIQAGMIGLL DASTRYQDNR
GAQFETFASQ RIRGAMLDEL RASDWGSRGL RQSARKVEQA IQALEHRLGR SASEGEIARE
LKMELDDYQS LLQDIQGCQL LYVEDFAQDG EAENPWLERQ AQADARLGGD DPLAQLLEAG
FRHELVDAIA ALPERDQLLL NLYYEEELNL REIGAILEVT QSRVCQLHSQ AISRLRAKLK
DSF
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