Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4141 |
Symbol | flhA |
ID | 7971878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4383938 |
End bp | 4386031 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794727 |
Product | flagellar biosynthesis protein FlhA |
Protein accession | YP_002946020 |
Protein GI | 239817110 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.303073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCCA TGGCCACCCT CACGCGCCTG CAGTCGCAAC TGTTCTCCGG CAGCCAGTGG AAGGGCCTTG CCGGCCCCAT CCTGATCGTG CTGATCCTGA GCATGATGGT GCTGCCGCTG CCGCCCTTCC TGCTGGACCT GCTGTTCACC TTCAACATCG CGATGTCGGT GATGGTGCTG CTGGTGAGCA TGTACACCAT GAAGGCGTTG GACTTCGCGG CCTTTCCGGC CGTGCTGCTT TTCTCCACGC TGCTGCGCCT GTCGCTCAAC GTGGCCTCCA CGCGCGTGGT GCTGATGCAC GGCCACACCG GGCCGGACGC GGCGGGCAAG GTGATCGAGG CCTTCGGCCA CTTCCTGGTG GGCGGCAACT TTGCCGTGGG CGTGATGGTG TTCATCATCC TGGTGCTGAT CAACTTCATG GTGATCACCA AGGGCGCGGG GCGCATCGCC GAGGTCGGCG CGCGCTTCAT GCTCGATGCG ATGCCGGGCA AGCAGATGGC GATCGACGCC GACCTGAACG CCGGCCTGAT CGGCGAAGAG GTGGCGCGCA AGCGCCGCCA GGAAGTCGCG CAGGAAGCCG ACTTCTACGG CTCGATGGAC GGCGCCAGCA AGTTCGTGCG CGGCGACGCG ATTGCCGGCC TGCTGATCAT GGTGATCAAC ATCATCGGCG GCCTGGTGGT CGGCATGCTG CAGCACGGGC TGGACTTCGG CACCGCGGGC ACGACCTACA CGCTGCTGGC CATCGGCGAC GGCTTGGTGG CGCAGATTCC GGCGCTGGTG ATCTCGACCG CCGCGGGCGT GATCGTCTCG CGCGTCACCA CCGACGAAGA CGTGGGCCGG CAGCTGACCG GCCAGCTGTT CTCCAACCCG CAGGTGCTCT TTCTCACGGC CGGCCTGATC GGGCTGATGG GGATGATCCC CGGCATGCCG AACCTGGCCT TCCTGCTGAT CGCGGGCAGC CTCGCGTGGC TGGGCCGGCG CATGCTCAAG CGCGCGCCGC AGGCCACGGC CGAACAGGCC GCAGCAGCCC AGGCCGCGGC CATGCCGTCG GCCGAGGCAC CCGAGGCGAC CTGGGACGAC GTGGCGCTGG TCGACCCGCT CGGCATGGAG GTCGGCTACC GGCTGATCCC GCTGGTGGAC CAGACCCAGA ACGGCGAGCT GCTGGGCCGC ATCAAGAGCA TCCGCAAGAA GGTGGCCCAG GAGATCGGCT TCCTGGCGCC GGTGGTGCAC ATCCGCGACA ACCTGGAGAT CCCGCCCAAC ACCTACGTGA TCAGCCTGAA GGGCGTGGAA ATCGGCCGCG GCGAGGCCTT CCCCAACCAG TGGATGGCCA TCAACCCCGG CCAGGTGAGC GGCACCCTGC CCGGCACGCC GACGCAGGAC CCGGCCTTCC ACCTGCCCGC GGTGTGGATC GACGCCAGCC TGCGCCAGGA AGCGCAGGTG CTCGGCTACA CGGTGGTCGA TGCCTGCACG GTGATGGCCA CGCACCTGAA CCACCTGATC CAGACCCATG CCGCCGAGCT GCTCGGCCGC CAGGAAGTGC AGCAGCTGCT CGACCAGATC GGCAAGACTG CGCCCAAGCT CACCGAGGAC CTGGTGCCCA AGGTCATCTC GCTGAGCACG CTGCACAAGG TGCTGCAGAA CCTGCTTGAC GAAGAGGTGC CGATCCGCGA CATGCGCACC ATCCTCGACG TGATGGCCGA GCACGCGCCC ACCGTCAAGG ACGCGGCCGA GCTCACCTCG CTCACGCGCC TGGCGCTCGG CCGCGCGATC ACGCAGCAGC TGTTCCCGGG CGATTCCGAG CTGCAGGTGA TCGGCCTGGA CAGCGCGCTC GACAGCGTGC TCCAGCAGGC GCTCACCAAC AACAACGGCA TCGAGCCGGG TCTTGCCAAC AGCCTGATGC AGCAGACCCG CGCCGCCATC GCGCGCCAGG AACAGCTGGG CCTGGCGCCG GTGCTGGTCG TCCAGCATTC GCTGCGCGTG CTGCTCTCGC GCTTCCTGCG CCGCAGCTTC CGCCAGCTCA AGGTTCTCTC GCATGCAGAG ATTCCTGACA CCCGCAACAT CAAGATCACC GCCACCATCG GAGGAAGAGT TTGA
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Protein sequence | MNAMATLTRL QSQLFSGSQW KGLAGPILIV LILSMMVLPL PPFLLDLLFT FNIAMSVMVL LVSMYTMKAL DFAAFPAVLL FSTLLRLSLN VASTRVVLMH GHTGPDAAGK VIEAFGHFLV GGNFAVGVMV FIILVLINFM VITKGAGRIA EVGARFMLDA MPGKQMAIDA DLNAGLIGEE VARKRRQEVA QEADFYGSMD GASKFVRGDA IAGLLIMVIN IIGGLVVGML QHGLDFGTAG TTYTLLAIGD GLVAQIPALV ISTAAGVIVS RVTTDEDVGR QLTGQLFSNP QVLFLTAGLI GLMGMIPGMP NLAFLLIAGS LAWLGRRMLK RAPQATAEQA AAAQAAAMPS AEAPEATWDD VALVDPLGME VGYRLIPLVD QTQNGELLGR IKSIRKKVAQ EIGFLAPVVH IRDNLEIPPN TYVISLKGVE IGRGEAFPNQ WMAINPGQVS GTLPGTPTQD PAFHLPAVWI DASLRQEAQV LGYTVVDACT VMATHLNHLI QTHAAELLGR QEVQQLLDQI GKTAPKLTED LVPKVISLST LHKVLQNLLD EEVPIRDMRT ILDVMAEHAP TVKDAAELTS LTRLALGRAI TQQLFPGDSE LQVIGLDSAL DSVLQQALTN NNGIEPGLAN SLMQQTRAAI ARQEQLGLAP VLVVQHSLRV LLSRFLRRSF RQLKVLSHAE IPDTRNIKIT ATIGGRV
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