Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4135 |
Symbol | |
ID | 7971872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4376479 |
End bp | 4377360 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644794721 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002946014 |
Protein GI | 239817104 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAC GCGTTTTCTT TCGCTCAGGC TGGTTGCCCT GGCTGCTGCT GACCCCGCAA ATGGCGGTGA TCCTCGTGTT TTTCTTCTGG CCGGCGGCGC AGGCGCTGCT GCAGTCGCTG CAGCAGCAGG ACGCCTTCGG CACGTCGGTG GAATTTGTCG GGCTCGACAA CTTCCGCCAG ATATTCAGCG ATCCGAGCTA TGTGGAGTCG TTCAAGACCA CCGCCCTGTT CTCGGTGCTG GTGGCGGGCA TCGGCATCAC GCTGTCGCTG GGGCTCGCGG TGTTTGCCGA CCGCATCACG CGCGGCGGCA CCTTCTACAA GACCATGCTG ATCCTGCCCT ACGCGGTGGC GCCCGCCGTG GCGGCCGTGC TCTGGGTGTT CATGTTCTCG CCGTCGCTGG GCGTGGTGGC CTATGCGCTC GGCAAGATCG GCATCGACTG GAACCACCTG CTGGACTCCG GCCACGCCAT GACGCTGATC GTGATGGCCT CGGTGTGGAA GCAGATTTCG TACAACTTCC TGTTCTTCCT GGCCGGCCTG CAGTCGATTC CCAAGTCGCT CATCGAGGCC GCGGCTATCG ACGGCGCGCG CCCGTGGCGC CGGTTCTGGA CCGTGCAGTT TCCGCTGCTC TCGCCCACCA CCTTCTTCCT GCTGGTGATC AACGTGGTCT ACGCCTTCTT CGACACCTTC GCGATCGTCG ATGCGGCCAC CCAGGGCGGG CCGGGCAAGG ACACGGCCAT CCTGGTCTAC AAGGTCTACT ACGACGGCTT CAAGGCCATG GACCTCGGCG GCTCGGCGGC GCAGTCGGTG GTGCTGATGG TGATCGTGGT GGCGCTCACC GTGATCCAGT TCCGCTACGT GGAAAAGAAG GTTCAATACT GA
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Protein sequence | MEKRVFFRSG WLPWLLLTPQ MAVILVFFFW PAAQALLQSL QQQDAFGTSV EFVGLDNFRQ IFSDPSYVES FKTTALFSVL VAGIGITLSL GLAVFADRIT RGGTFYKTML ILPYAVAPAV AAVLWVFMFS PSLGVVAYAL GKIGIDWNHL LDSGHAMTLI VMASVWKQIS YNFLFFLAGL QSIPKSLIEA AAIDGARPWR RFWTVQFPLL SPTTFFLLVI NVVYAFFDTF AIVDAATQGG PGKDTAILVY KVYYDGFKAM DLGGSAAQSV VLMVIVVALT VIQFRYVEKK VQY
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