Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4108 |
Symbol | |
ID | 7974430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4350962 |
End bp | 4351594 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644794694 |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_002945987 |
Protein GI | 239817077 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.755468 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAAAA TTGGAATTGT GGACGACCAC GCCATCGTCA GATCTGGCCT CAGGCAGTTC TTCTCCGAAC ACGTCGATTT GCGCGTGGCC GGCGAAGCCG CCAGCGGGCG CGAGGCCATC GAGCTCGTGC GCACCACCGA ACTCGACGTG CTGGTGATGG ACCTTTCCAT GCCGGGGCAG AGCGGCATCG ACGCGCTCGC CATGATCCGC GCCAAGGCGC CGGACGTGGG CATCCTCATC CTGAGCGGCT ATCCCGAAGA GCACTACGCG ATGAATCTCA TCCGCCAGGG TGCGAGCGGC TACCTCAACA AGGAATGCGA TCCGATGGAG ATCGTCAACG CCATTCGCAC CATCTCGCTC GGCCGCCGCT ACATCACGCC GGCCGTGGCG GAGCTGCTGG CACGCCAGCT CGACCGCAAG GACGATGCCG CGCCGCACGA GCAGCTGTCG GAGCGCGAGT TCCAGGTGTT CCTGAAGCTC GCCAAGGGCG AGACCGCGGG CGACATCGCC AAGACGCTGT CGCTGTCGGT GAAGACCGTC AGCACCTATC GCACGCGCCT CATGGAGAAG ATGAACCTGT CCTCCAACAG CGACCTCACG TACTACGCAC TGAAGAACAA GCTGATCGAT TGA
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Protein sequence | MIKIGIVDDH AIVRSGLRQF FSEHVDLRVA GEAASGREAI ELVRTTELDV LVMDLSMPGQ SGIDALAMIR AKAPDVGILI LSGYPEEHYA MNLIRQGASG YLNKECDPME IVNAIRTISL GRRYITPAVA ELLARQLDRK DDAAPHEQLS EREFQVFLKL AKGETAGDIA KTLSLSVKTV STYRTRLMEK MNLSSNSDLT YYALKNKLID
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