Gene Vapar_4034 details

Gene Information

• Locus tag: Vapar_4034
• ID: 7974600
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4277675
• End bp: 4278331
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644794621
• Product: Smr protein/MutS2
• Protein accession: YP_002945914
• Protein GI: 239817004
• COG category: [S] Function unknown
• COG ID: [COG2840] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTCCC GCACGCCGCC CATCAAGAAC CTGGCCGACC TGAAGCAGGT GCAGCGCACG 
CTGGCCGAGA CCCGCGAGCG CGAAGCGGCA GCGGCCGCCG CCAAGGCCGC GGCCGAGCGC 
AAGCGCATGG CCGAGAAAGA CCTGTTCGCG CGCGCCATCG GCGCGACCGA GCCGCTGCGC 
CGCAAGGCCG TGGTGCCGCT CGCGCCCGAG CCGCCGGCGC CCATTCCGGT GCAGCACCAG 
CTCGACGAGC AGCGCGTGCT GCGCGAATCG CTCTCCGACG AGTTCGACGT GACCACCCTG 
CTCGACGTCG ACGACGCCAT GAGCTTTCGC CGCCCCGGCA TCGGCACCGA CGTGACCGCG 
CGGCTGCGCA AGGGCGACTG GAGCATCCAG GCGCAGGTCG ACCTGCACGG CCTGCGCAGC 
GACGAGGCGC GCGAGGCGCT CGGCGGCTTC ATCCGCAATG CCTACAAGCA GGGGCTGCGC 
TGCGTGCGCG TGGTGCACGG CAAGGGCCTG GGCTCGCCCG GCAAGCAGCC GGTGCTCAAG 
ACCAAGACGC AGCGCTGGCT GATCCAGAAG AACGAGGTGA TCGCCTTCGT GCAGGCCAAG 
CCGGCCGAAG GCGGCGCCGG CGCGCTGGTG GTTCTGCTGG CGCCGGCGCG GCGCTGA 

 

Protein sequence

MASRTPPIKN LADLKQVQRT LAETREREAA AAAAKAAAER KRMAEKDLFA RAIGATEPLR 
RKAVVPLAPE PPAPIPVQHQ LDEQRVLRES LSDEFDVTTL LDVDDAMSFR RPGIGTDVTA 
RLRKGDWSIQ AQVDLHGLRS DEAREALGGF IRNAYKQGLR CVRVVHGKGL GSPGKQPVLK 
TKTQRWLIQK NEVIAFVQAK PAEGGAGALV VLLAPARR