| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4031 |
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| Symbol | ispH |
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| ID | 7974597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4275442 |
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| End bp | 4276410 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794618 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_002945911 |
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| Protein GI | 239817001 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCGA ACATCGAGGA AGTGATCCTT GCCGAGCCGC GCGGCTTCTG CGCCGGCGTT
GACCGCGCCA TCGAGATCGT CGAGCGCGCC ATTGCCAAGT TCGGCGCGCC GATCTACGTG
CGCCACGAGA TCGTGCACAA CACCTACGTG GTCAACGAGC TCAAGGCCAA GGGCGCGATC
TTCATCGAGG ACCTGGCCGA CGTGCCGCCC GGCGCCACGC TGGTGTTCAG CGCCCATGGC
GTGAGCAAAG CGGTGCAGCA GGAGGCGCGC GACCGCGGCT TCGACGTCTT CGATGCCACC
TGCCCGCTGG TGACCAAGGT GCACGTCGAG GTCGCCAAGC TCGCCAAGGA GGGCTACGAA
TTCATCATGA TCGGCCACAA GGGACACCCC GAGGTCGAAG GCACCATGGG CCAGCTTTCG
AGCGGCATCC ACCTGGTGGA GGACGTGGAA GACGTGGCAA AGGTGGCGCC CGCGCAGACC
GAGAAGCTCG CCGTGGTCAC GCAGACCACG CTCAGCGTGG ACGACGCAGC CGAGATCGCG
GCGGCCGTGC GCACGCGCTT TCCGAAGGTG CGCGAGCCCA AACAGCAGGA CATCTGCTAT
GCCACGCAGA ACCGCCAGGA CGCGGTCAAG ATCCTGAGCC CGCAGGTCGA CCTGGTGATC
GTGGTCGGCA GCCCCACCAG CTCCAACAGC AACCGGCTGC GCGAGCTGGC CGAGCGCCTG
GGCACCGAAA GCTACATGGT CGATTCGGCC GACGAGCTCA AGCCCGAGTG GTTCGAGGGC
AAGGGCCGGG TCGGCCTCAC GGCCGGCGCT TCCGCTCCCG AGGTGCTGGT GCGCGAAGTG
GTCGAGCGCG TGAGGGCGCT GGGCGCGGTG TCGGTCCGCA AGATGGACGG CATCGAGGAA
ACCATCAAGT TTCCGCTCCC CAAGGGCCTC AAGCTCGACG ACATTCCCCC TCCTGGACAC
ATCTCTTGA
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| Protein sequence | MNPNIEEVIL AEPRGFCAGV DRAIEIVERA IAKFGAPIYV RHEIVHNTYV VNELKAKGAI
FIEDLADVPP GATLVFSAHG VSKAVQQEAR DRGFDVFDAT CPLVTKVHVE VAKLAKEGYE
FIMIGHKGHP EVEGTMGQLS SGIHLVEDVE DVAKVAPAQT EKLAVVTQTT LSVDDAAEIA
AAVRTRFPKV REPKQQDICY ATQNRQDAVK ILSPQVDLVI VVGSPTSSNS NRLRELAERL
GTESYMVDSA DELKPEWFEG KGRVGLTAGA SAPEVLVREV VERVRALGAV SVRKMDGIEE
TIKFPLPKGL KLDDIPPPGH IS
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