Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4028 |
Symbol | |
ID | 7974594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4272576 |
End bp | 4273907 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644794615 |
Product | seryl-tRNA synthetase |
Protein accession | YP_002945908 |
Protein GI | 239816998 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0172] Seryl-tRNA synthetase |
TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.792867 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTGACA TCACTCTGCT CCGCAAAGAC CTGGCCTCCG CTGTGGCCGG CCTCGAAAAA CGCAAGAAGA ACCAGCCCTA CCTCGATGTG TCGGCGTTCA CCGCGCTCGA GGCCGAGCGC AAGACGCTGC AAACCCGCAC CGAGGAGATC CAGGCCCGGC GCAACGCGCT GAACAAGCAG ATCGGCCCGC TCAAGGCCAA GGGCGAGCCG GTCGATGCGC TGATGGCCGA GGTCAATGCG CTCAAGGCCG AGCAGGAATC GCAGTCCGCG CGGCTCGACC AGATCCAGCC CGAACTGCAG GCGCTGCTGC TGGCCGTGCC CAACCTGCCG CACGTCAGCG TGCCGGTCGG CGAGGACGAA GCCGGCAACG TCGAGATGCG CCGCTGGAGC CCGCAGGGCG GTGCCGGCGC CAATGCCGCG CCGCTGCCCT TCGCGGCCAA GGACCACGTC GACCTGGGCG CGCCCCTGGG GCTCGACTTC GAGATGGGCG CCAAGCTCGC GGGCTCGCGC TTCACCGTCA TGAAGGGGCC GATCGCCCGG CTGCACCGCG CGCTCGCGCA GTTCATGCTC GACATCCAGA CCGAGAAGCA CGGCTATGCC GAGTGCTACG TGCCCTACAT CGTCAACGCC GCCACCCTCA GCGGCACCGG CCAGCTGCCC AAGTTCGAAG GCGACCTGTT CGCTGCCAAG AAGGGCGGCC AGGAGGGCGA GCCCGCGCCC GACCATTCGG CGCTCTACCT CATTCCGACC AGCGAAGTGC CGCTCACCAA CTTCGTGCGC GACGAGGTGG TGGCCGAGGC CCAATTGCCG ATCAAGCTCA CGGCCCACAC GCCGTGCTTT CGCTCCGAAG CCGGCAGCGC CGGGCGCGAC ACGCGCGGCA TGATCCGCCA GCACCAGTTC GACAAGGTCG AGATGGTGCA GATCGTCCAC CCCGAAAAGA GCTACGACGC GCTCGAGCAG ATGACCGGCC ACGCCGAGGC CGTGCTGCAG GCGCTCGAAC TGCCGTACCG CGTGGTGCTG CTGTGCACCG GCGACATGGG CTTTGGCGCC ACCAAGACCT ACGACCTGGA GGTGTGGCTG CCGGCGCAGA ACACCTACCG CGAGATCAGC TCGGTGTCGA ACTGCGAAGC CTTCCAGGCG CGCCGCCTGC AGGCCCGTTT CAAGAACGCG CAGGGCAAGA ACGAACTCGT CCACACCCTC AACGGCTCGG GCCTGGCGGT GGGCCGCACA TTGGTCGCGG TGCTGGAAAA CCACCAGAAC GAGGACGGCT CGATCAACGT GCCCGCGGCG CTGCGGCCCT ACCTCGGCGG ACTGGAACTG TTGCGCGGCT GA
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Protein sequence | MLDITLLRKD LASAVAGLEK RKKNQPYLDV SAFTALEAER KTLQTRTEEI QARRNALNKQ IGPLKAKGEP VDALMAEVNA LKAEQESQSA RLDQIQPELQ ALLLAVPNLP HVSVPVGEDE AGNVEMRRWS PQGGAGANAA PLPFAAKDHV DLGAPLGLDF EMGAKLAGSR FTVMKGPIAR LHRALAQFML DIQTEKHGYA ECYVPYIVNA ATLSGTGQLP KFEGDLFAAK KGGQEGEPAP DHSALYLIPT SEVPLTNFVR DEVVAEAQLP IKLTAHTPCF RSEAGSAGRD TRGMIRQHQF DKVEMVQIVH PEKSYDALEQ MTGHAEAVLQ ALELPYRVVL LCTGDMGFGA TKTYDLEVWL PAQNTYREIS SVSNCEAFQA RRLQARFKNA QGKNELVHTL NGSGLAVGRT LVAVLENHQN EDGSINVPAA LRPYLGGLEL LRG
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