Gene Vapar_4028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4028 
Symbol 
ID7974594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4272576 
End bp4273907 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content68% 
IMG OID644794615 
Productseryl-tRNA synthetase 
Protein accessionYP_002945908 
Protein GI239816998 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0172] Seryl-tRNA synthetase 
TIGRFAM ID[TIGR00414] seryl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.792867 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGACA TCACTCTGCT CCGCAAAGAC CTGGCCTCCG CTGTGGCCGG CCTCGAAAAA 
CGCAAGAAGA ACCAGCCCTA CCTCGATGTG TCGGCGTTCA CCGCGCTCGA GGCCGAGCGC
AAGACGCTGC AAACCCGCAC CGAGGAGATC CAGGCCCGGC GCAACGCGCT GAACAAGCAG
ATCGGCCCGC TCAAGGCCAA GGGCGAGCCG GTCGATGCGC TGATGGCCGA GGTCAATGCG
CTCAAGGCCG AGCAGGAATC GCAGTCCGCG CGGCTCGACC AGATCCAGCC CGAACTGCAG
GCGCTGCTGC TGGCCGTGCC CAACCTGCCG CACGTCAGCG TGCCGGTCGG CGAGGACGAA
GCCGGCAACG TCGAGATGCG CCGCTGGAGC CCGCAGGGCG GTGCCGGCGC CAATGCCGCG
CCGCTGCCCT TCGCGGCCAA GGACCACGTC GACCTGGGCG CGCCCCTGGG GCTCGACTTC
GAGATGGGCG CCAAGCTCGC GGGCTCGCGC TTCACCGTCA TGAAGGGGCC GATCGCCCGG
CTGCACCGCG CGCTCGCGCA GTTCATGCTC GACATCCAGA CCGAGAAGCA CGGCTATGCC
GAGTGCTACG TGCCCTACAT CGTCAACGCC GCCACCCTCA GCGGCACCGG CCAGCTGCCC
AAGTTCGAAG GCGACCTGTT CGCTGCCAAG AAGGGCGGCC AGGAGGGCGA GCCCGCGCCC
GACCATTCGG CGCTCTACCT CATTCCGACC AGCGAAGTGC CGCTCACCAA CTTCGTGCGC
GACGAGGTGG TGGCCGAGGC CCAATTGCCG ATCAAGCTCA CGGCCCACAC GCCGTGCTTT
CGCTCCGAAG CCGGCAGCGC CGGGCGCGAC ACGCGCGGCA TGATCCGCCA GCACCAGTTC
GACAAGGTCG AGATGGTGCA GATCGTCCAC CCCGAAAAGA GCTACGACGC GCTCGAGCAG
ATGACCGGCC ACGCCGAGGC CGTGCTGCAG GCGCTCGAAC TGCCGTACCG CGTGGTGCTG
CTGTGCACCG GCGACATGGG CTTTGGCGCC ACCAAGACCT ACGACCTGGA GGTGTGGCTG
CCGGCGCAGA ACACCTACCG CGAGATCAGC TCGGTGTCGA ACTGCGAAGC CTTCCAGGCG
CGCCGCCTGC AGGCCCGTTT CAAGAACGCG CAGGGCAAGA ACGAACTCGT CCACACCCTC
AACGGCTCGG GCCTGGCGGT GGGCCGCACA TTGGTCGCGG TGCTGGAAAA CCACCAGAAC
GAGGACGGCT CGATCAACGT GCCCGCGGCG CTGCGGCCCT ACCTCGGCGG ACTGGAACTG
TTGCGCGGCT GA
 
Protein sequence
MLDITLLRKD LASAVAGLEK RKKNQPYLDV SAFTALEAER KTLQTRTEEI QARRNALNKQ 
IGPLKAKGEP VDALMAEVNA LKAEQESQSA RLDQIQPELQ ALLLAVPNLP HVSVPVGEDE
AGNVEMRRWS PQGGAGANAA PLPFAAKDHV DLGAPLGLDF EMGAKLAGSR FTVMKGPIAR
LHRALAQFML DIQTEKHGYA ECYVPYIVNA ATLSGTGQLP KFEGDLFAAK KGGQEGEPAP
DHSALYLIPT SEVPLTNFVR DEVVAEAQLP IKLTAHTPCF RSEAGSAGRD TRGMIRQHQF
DKVEMVQIVH PEKSYDALEQ MTGHAEAVLQ ALELPYRVVL LCTGDMGFGA TKTYDLEVWL
PAQNTYREIS SVSNCEAFQA RRLQARFKNA QGKNELVHTL NGSGLAVGRT LVAVLENHQN
EDGSINVPAA LRPYLGGLEL LRG