Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4012 |
Symbol | |
ID | 7974577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4256500 |
End bp | 4257768 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644794598 |
Product | urea ABC transporter, urea binding protein |
Protein accession | YP_002945892 |
Protein GI | 239816982 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.394915 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGTC GTTTCACACT CAAGGCGCTC ACCGCCGCCG TCGCCCTGGC CAGCATCTCC GCTGCGCCGG CCTTTGCCGC CGACACCATC AAGGTCGGCG TGCTGCACTC GCTGTCGGGC ACGATGGCCA TTTCGGAAAC CGTGTTGAAA GACACGGTGC TGATGGCCAT CGACGACATC AACAAGAAGG GCGGCGTGCT GGGCAAGCAG CTCGAGCCCG TGGTGGTCGA CCCGGCGTCC AACTGGCCGC TGTTCGCAGA AAAGACCAAG CAGCTGCTCG GCCAGGACAA GGTCTCGGTG ATCTTCGGCT GCTGGACCTC GGTGTCGCGC AAGTCGGTGC TGCCGGTGGT CGAGGAAATG AACGGCCTCT TGTTCTACCC CGTGCAGTAC GAGGGCGAAG AGCTCAGCAA GAACGTGTTC TACACCGGCG CCGCGCCCAA CCAGCAGGCC ATTCCGGCGG TCGACTACCT GATGAGCAAG GAAGGCGGCG GTGCCAAGCG CTGGGTGCTG CTGGGCACCG ACTATGTCTA CCCCCGCACC ACCAACAAGA TCCTGCGCGC CTACCTCAAG AGCAAGGGCG TGAAGGACAC CGACATCGAC GAGAAGTACA CCCCCTTCGG CCACAGCGAC TACCAGACCA TCGTTGCCGA CATCAAGAAG TTCTCCTCGG GCGGCAAGAC CGCGGTGGTC TCGACCATCA ACGGCGACTC GAACGTGCCC TTCTACAAGG AACTCGGCAA CGCAGGCCTC AAGGCCAAGG ACGTGCCGGT GGTGGCCTTC TCGGTGGGCG AGGAAGAACT GCGCGGCGTG GACACCAAGC CGCTGGTGGG CCACCTGGCT GCATGGAACT ACTTCATGTC GATCAAGAAC CCGACCAACA CCGCGTTCAT CAAGCAGTGG AGCGACTACG CCAAGGCCAA GAACATCGCC GGCCACAAGG ACAAGCCGCT CACCAACGAC CCGATGGAAG CCACCTGGAT CGGCATCCAC ATGTGGAAGC AGGCCGTGGA GAAGGCCAAG AGCACCGACA CCGACAAGGT GATCGCGGCG ATGGCCGGCC AGACCTTCAC GGCGCCCTCG GGCATCGTCT CGAAGATGGA CGAGAAGAAC CATCACCTGC ACAAGAGCGT GTTCATCGGC GAGATCAAGG CCGACGGCCA GTTCAGCGTG GTTTGGAAGA CGCCGGGCCC GGTCAAGGCC AAGCCGTGGA GCCCGTACAT CGAAGGCAAC GACAAGAAGC CGGACCAGCC GGCCGGCAAG TCGCTGTAA
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Protein sequence | MQRRFTLKAL TAAVALASIS AAPAFAADTI KVGVLHSLSG TMAISETVLK DTVLMAIDDI NKKGGVLGKQ LEPVVVDPAS NWPLFAEKTK QLLGQDKVSV IFGCWTSVSR KSVLPVVEEM NGLLFYPVQY EGEELSKNVF YTGAAPNQQA IPAVDYLMSK EGGGAKRWVL LGTDYVYPRT TNKILRAYLK SKGVKDTDID EKYTPFGHSD YQTIVADIKK FSSGGKTAVV STINGDSNVP FYKELGNAGL KAKDVPVVAF SVGEEELRGV DTKPLVGHLA AWNYFMSIKN PTNTAFIKQW SDYAKAKNIA GHKDKPLTND PMEATWIGIH MWKQAVEKAK STDTDKVIAA MAGQTFTAPS GIVSKMDEKN HHLHKSVFIG EIKADGQFSV VWKTPGPVKA KPWSPYIEGN DKKPDQPAGK SL
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