Gene Vapar_4006 details

Gene Information

• Locus tag: Vapar_4006
• ID: 7974571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4249227
• End bp: 4249892
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644794592
• Product: putative transmembrane anti-sigma factor
• Protein accession: YP_002945886
• Protein GI: 239816976
• COG category: [K] Transcription
• COG ID: [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor)

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAATTC ATGACGACGA GCTGGGGCCG CTGATCCGGC GCCACGCCGT GCGGCACGCG 
CCGCCCGCGG GGCTGGCCGA GCGCATCGCG CAGTCGGTGC AGTCCGAGGC CGGAGCGGCT 
GCCGCGCCTG CCGTTGCGGT GCGCAGCCGG CGCGGCGTGT GGCGGGGGCT CGCCTGGTTC 
GGTACGGGGG CGGCAACGGC CTGGGGTCTC GCGCTCGTTC TGCTGGCGAC GCCGGTGCCG 
CCGCAGGACG CGCTCGGCGA GGCGGTCACG GCCAACCACG TGCGCTCGCT GATGGCGGCG 
CACCTGGCGG ACGTGGCCTC GTCCGACCAG CACACGGTGA AGCCCTGGTT TGCCGGCAAG 
CTCGACTTCT CGCCGCCGGT GGTGGACCTG GCGTCCGACG GTTTTCCGTT GGCGGGCGGG 
CGGCTCGACT ACCTCGACGG GCGGACGGTG GCGGCGCTGG TCTATCGCTC AGGGCCGCAC 
GTCATCAACC TGTTTGTCTG GCCCGCGGCC GAGGCGAAGG TGCAGCCGCC CGCGTTCTCC 
ACGCGGCAGG GCTACCAGCT CGCGCACTGG GCCGAGGGCG GCATGCAGGC GTGGGCGGTG 
TCGGACCTGA ATGCGGCCGA GTTGCGGAAG TTTGCCTCGC TGATGCGCGA GCGCACCGGG 
CCGTAG 

 

Protein sequence

MQIHDDELGP LIRRHAVRHA PPAGLAERIA QSVQSEAGAA AAPAVAVRSR RGVWRGLAWF 
GTGAATAWGL ALVLLATPVP PQDALGEAVT ANHVRSLMAA HLADVASSDQ HTVKPWFAGK 
LDFSPPVVDL ASDGFPLAGG RLDYLDGRTV AALVYRSGPH VINLFVWPAA EAKVQPPAFS 
TRQGYQLAHW AEGGMQAWAV SDLNAAELRK FASLMRERTG P