| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4005 |
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| Symbol | |
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| ID | 7974570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4248677 |
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| End bp | 4249240 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794591 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002945885 |
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| Protein GI | 239816975 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCGACC GCACACGCCA GTTCGAAGCC GCCGCGCTGC CGCATCTCGA TGCGGCGTGG
AACCTTGCGC GCTGGCTGCT GCGCGACGAC CAGCTGGCCG ACGATGCGGT GCAGGAGGCG
TACCTGCGCG CCTTCCGTTT TTTCGACGGG CTGCGCGGCG AGAGCGCGCG GCCGTGGCTG
CTCGGCATCG TGCGCAACGC CTGCTACGAC TGGATGCGGC AGAACCGGCA ACTGGCCGAC
CAGCTCGAGT TCGACGAGTT GCGCGACAGC GGGGCCATGC CACCCGCTTC CGCGGAATGC
GCCGACCCGG CCCGGCAGTG GGAGCAGCGC GCGCAGGGCG AGCGCATCAA CGCCGCCATC
GACGCCCTGC CCGCGGCCTA TCGCGAAGTC ATCGTGCTGC GCGAACTCGA AGAGATGCGC
TACGAGGACA TCGCACGCAT CGCGGGTGTC CCCCTGGGCA CGGTGATGTC GCGGTTGTCG
CGTGCGCGGG CATTGCTGCG CGAAAGCCTG CGCGGCGAAC GCCCCGGGGA CGGGACCGAA
AGGACACAGC ATGCAAATTC ATGA
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| Protein sequence | MTDRTRQFEA AALPHLDAAW NLARWLLRDD QLADDAVQEA YLRAFRFFDG LRGESARPWL
LGIVRNACYD WMRQNRQLAD QLEFDELRDS GAMPPASAEC ADPARQWEQR AQGERINAAI
DALPAAYREV IVLRELEEMR YEDIARIAGV PLGTVMSRLS RARALLRESL RGERPGDGTE
RTQHANS
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