| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3969 |
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| Symbol | |
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| ID | 7974534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4212836 |
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| End bp | 4213876 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794555 |
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| Product | NMT1/THI5 like domain protein |
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| Protein accession | YP_002945849 |
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| Protein GI | 239816939 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0791999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGTC GTCGATTCTT TTTTCTTGCG GCCAGTGCCG CCGCCAGCAC CCTTGTCGCT
CCCGCCGTCT TCGCCCAGGG CGGCGGCAAG CCGACCCCGC TCAAGTTCAC GCTCGACTTC
CGCATCAACG GCCAGACCGC GCCCTTCTTC CTCGCGCACA GCAAGGGCTA CTACCGGGAC
GAAGGCCTGG ACGTGGCCAT CGACACCGGC GCCGGCTCGG TCGCCTCGAT CACGCGCATC
GCGAGCGGCG TCTACCAGAT GGGCCTGGGC GACATCAGCT CGCTGGTCGA GTTCAATGCG
CAGAACCCCG GCACCCCGAT GGTGCAGGCG GTGTACCAGT ACTACAACCG CGCACCCTTC
GTGATCATCG GCCGCAAGGA CCGCGGCGTC ACGGCCGACT TCAAAAGCCT CGCAGGCAAG
AAGGTGGCCG CGGCGGCCGT CGAATCGACC CGCCGCGCAT GGCCGATGGT GGCGCGCAAG
CAGGGCATGC GCAGCGACGC CTTCCAGTGG CAGACCACCG ACTTCAGCGC GCGCGACAAC
GTGATGGTGC GCGGCGACGT CGATGCCGCC ACCTACTTTC ACGACTCTGC CATTTCGCTC
TTCGCGCGCA TGAAGGCGGA GGAACTGTCG GTGCTCAAAT ATGCGGACGC GGGCGTCAAC
CTGTACGGCA ACGCCATCCT CGCGAGCAGC AACCTCATTG CGCAGAACCC CAGGGTGGTT
GCGGCCTTCC TGCGCGCCAC CAACCGCGCC ATCGTCGAGA CCTTTGCCAA TCCGGCGCCC
AGCATTGCGG CCATGCGCCA GCGCGAACCG ATCCTCGATG AGAAAATGGA GCTTGAACGC
TGGGGTGTCA CGGCGCAATA TGTCGGTGCC GCCGACACGC GCGGCCACGG CCTCGGCGAC
ATCCGCAAGC TCACGCTCGA GCAGCAGGTC GACGAGGTCG CCGACGTATT CGGCCTCAAG
GTCAAGCCCT CGTCCGACGC CATCTTCAAC ACGTCGATGC TGCCATCGCG CAACGAACGC
ATGATTCCCA CCAAGGCATG A
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| Protein sequence | MQRRRFFFLA ASAAASTLVA PAVFAQGGGK PTPLKFTLDF RINGQTAPFF LAHSKGYYRD
EGLDVAIDTG AGSVASITRI ASGVYQMGLG DISSLVEFNA QNPGTPMVQA VYQYYNRAPF
VIIGRKDRGV TADFKSLAGK KVAAAAVEST RRAWPMVARK QGMRSDAFQW QTTDFSARDN
VMVRGDVDAA TYFHDSAISL FARMKAEELS VLKYADAGVN LYGNAILASS NLIAQNPRVV
AAFLRATNRA IVETFANPAP SIAAMRQREP ILDEKMELER WGVTAQYVGA ADTRGHGLGD
IRKLTLEQQV DEVADVFGLK VKPSSDAIFN TSMLPSRNER MIPTKA
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