| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3955 |
|---|
| Symbol | |
|---|
| ID | 7970384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4198658 |
|---|
| End bp | 4199437 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794541 |
|---|
| Product | hydroxypyruvate isomerase |
|---|
| Protein accession | YP_002945835 |
|---|
| Protein GI | 239816925 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | [TIGR03234] hydroxypyruvate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGT TCGCAGCCAA CCTCACGATG CTCTTCACCG AGCTGCCGTT CATGCAGCGC
TTCGAGGCCG CCGCCAAGGC CGGCTTCGAG GCGGTGGAAT ACCTGTTCCC CTACCCCTTC
GAAAAGAAGG AGCTCGCAGC CGCGCTGCGC GCCAACGGTT TGCAGCAGGT GCTGCACAAC
CTGCCGGCCG GCGACTGGGA CAAGGGCGAG CGCGGCATCG CCTGCCATCC GGAGCGCACC
GGCGAGTTCC GCGAAGGCAT TGCCATGGCC ATCGACTACG CCACCGCCCT GGGCTGCCCG
CAGCTCAACT GCCTGGTCGG CAAGGTGCCC GCGGGCGCCG ACATCAACGT AGTGAACCGC
ACGGTGATCG ACAACCTGCG CCTGGCCGCG CGCGAACTCG AGGCCGCGGG CCTGCGCCTG
CTGGTCGAAC CGATCAACAC CTTCGACATC CCGGGCTTCT ACCTGAACCG CACCGACAAG
GCGCTCGCGC TCATCGAGGC GGTGGGCTCG CCGAACCTGA AGGTGCAGTA CGACATCTAC
CACGCGCAGC GCATGGAAGG CGAGCTCGGC AACACGCTCT CGAAGCATCT TGCGCAGATC
GGCCACATCC AGCTGGCCGA CAACCCCGGG CGCGGCGAGC CGGGCACGGG CGAGATCAAC
TACCCCTGGC TCTTCCGGCA CATCGATTCG ATCGGCTACG AGGGCTGGAT CGGCTGCGAA
TACAAGCCGC GCAGCGACAC CGTGGACGGC CTCGGCTGGC GCGAAGCGCT CACGCAATAA
|
|---|
| Protein sequence | MPKFAANLTM LFTELPFMQR FEAAAKAGFE AVEYLFPYPF EKKELAAALR ANGLQQVLHN
LPAGDWDKGE RGIACHPERT GEFREGIAMA IDYATALGCP QLNCLVGKVP AGADINVVNR
TVIDNLRLAA RELEAAGLRL LVEPINTFDI PGFYLNRTDK ALALIEAVGS PNLKVQYDIY
HAQRMEGELG NTLSKHLAQI GHIQLADNPG RGEPGTGEIN YPWLFRHIDS IGYEGWIGCE
YKPRSDTVDG LGWREALTQ
|
|---|
| |