| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3950 |
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| Symbol | |
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| ID | 7970379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4192537 |
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| End bp | 4193619 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794536 |
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| Product | protein of unknown function UPF0118 |
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| Protein accession | YP_002945830 |
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| Protein GI | 239816920 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0628] Predicted permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCAC CCCAACTCCA GCGCGGCGTG TTCCTCGCCC TGCTCGCCGC CGTCACGGTC
GCCTTCCTCT GGGTGCTGAT GCCGTTCTTC GGCGCGGTGC TGTGGGGCGT GGCCCTGGCC
ATCCTGTTCA CGCCGCTCTA CAAGCGGCTG CTCAAGGCCA TGCCCGGCAA GCCCAATGCC
GCGGCGCTGT CGACGCTGGC CATCTGCCTC TTCATCGTGA TTCTCCCGCT GGCCATGGTG
GGCGTGTCGC TGGTGCAGGA GATCGTGCAG GTCACGCAGA GCATCCGCTC GGGGCAGATC
AATTTCGCGG CCTACTTCCA GCAGATCCTC AACGCCGTGC CGCAATGGCT GCTGAACCTG
TTCGACCGCT TCAACCTCGG CGACATGGAA GCCTGGCAGG CCCGCATCTC CGCGGGCGCG
GCACAGGGCA GCCAGCTCAT CGCGGGCCAG GCGCTGACCA TCGGCCAGAA CACCTTCGAC
TTCGTCATCA GCTTCTTCGT GATGCTGTAC CTGCTGTATT TCCTGGTGCG CGACGGCTCG
GCGCTTTCGA AGTCGATGCG CGAGGCCGTG CCGCTCGCCA GGCCGCACAC GCACTACCTG
CTCAACAAGT TCACCACCGT GATCCGCGCC ACCGTCAAGG GCAACGTGGC GGTGGCCATT
GCGCAGGGCG CGATCGGCGG GCTGGCCTTC TGGCTGCTGG GCGTGCAGGG TGCGCTGCTG
TGGGCCGTGC TGATGGCCTT CCTGTCGCTG CTGCCCGCGG TGGGCGCGGC GCTCATCTGG
GGGCCGGTGG CCATCTATTT CCTTGCCACC GGGCATTTCT GGCAGGGCGG CATCCTGGTC
TTCGTGGGCG TGTTCGTGAT CGGCCTGGTC GACAACATCC TGCGCCCGGT GCTGGTGGGC
AAGGACACGC AGATGCCCGA CTACATCGTG CTGATGTCGA CCATCGGCGG CATGGCGATC
TTCGGCATCA ACGGCTTCGT GATCGGTCCG GTGATCGCGG CGCTGTTCAT GGCGGCGTGG
AGCCTGTTCG TGGAGTCGGG CCAGCTGGAG ACCAGCCCCG GCGAGGACAA GAAGGGCAGC
TGA
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| Protein sequence | MNSPQLQRGV FLALLAAVTV AFLWVLMPFF GAVLWGVALA ILFTPLYKRL LKAMPGKPNA
AALSTLAICL FIVILPLAMV GVSLVQEIVQ VTQSIRSGQI NFAAYFQQIL NAVPQWLLNL
FDRFNLGDME AWQARISAGA AQGSQLIAGQ ALTIGQNTFD FVISFFVMLY LLYFLVRDGS
ALSKSMREAV PLARPHTHYL LNKFTTVIRA TVKGNVAVAI AQGAIGGLAF WLLGVQGALL
WAVLMAFLSL LPAVGAALIW GPVAIYFLAT GHFWQGGILV FVGVFVIGLV DNILRPVLVG
KDTQMPDYIV LMSTIGGMAI FGINGFVIGP VIAALFMAAW SLFVESGQLE TSPGEDKKGS
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