Gene Vapar_3949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3949 
Symbol 
ID7970378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4191746 
End bp4192450 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content74% 
IMG OID644794535 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002945829 
Protein GI239816919 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACCG ACGTCAACCC CACCTCCATC GCCGAGCGCG TGGTCGAGGC CATCCTGGCG 
CAAAAGCTCG CGCCGGGCGA GCGGCTCGGC GAGCAGGCGC TGGCCGAGAA CTTCGCGGTG 
AGCCGGACCA TGGTGCGCGA GGCGCTCATG CAGCTGCAGG CGCGCGGCTT CGTCGAGGTG 
CAGTCCCGCC GCGGCTGGTA CGTGGTGGAG CCCTCGGCCG AGGAAGCGCG CGACGCCTTC 
TCGGCGCGGC GCATCGTCGA GGCGGGCATC CTGGCCGAAA GCGAAGGCCG GCCGCTGCAG 
AAGGCCATCC GCAAGCTGCG CGACCACATT GCCGACGAGC AGCGCGCCAT CGAGGGCGCC 
GATGCCGCCA CGCGCGCCTT CCTGCTGGCC GATTTCCACG TCTGCCTGGC CGAGCAGATG 
GGCCACCAGC TGCTGGTCGA CGTGCTGCGC GACCTCACGG CCCGCACCAC GCTGGCCGCC 
ACGCTCTACC AGTCCAGGCA CGAGGCCGGG CAGTCCTGCG CGGAGCACGG CGCCATCGTG 
GCCGCGCTGG AGGCCGGCGA CACGGCCCGG GCGCGCCAGC TGATGATCGA GCACATCGGC 
AACGTCGAGC GCTCGCTCGA GGTCGAAACC ACGGCCGGGC CCGACGCGCC CGCCCGGCTG 
CGCGCCACGC TGGCGCCGGT GGCGCTGCCG CGCGCCAGGC GCTGA
 
Protein sequence
MATDVNPTSI AERVVEAILA QKLAPGERLG EQALAENFAV SRTMVREALM QLQARGFVEV 
QSRRGWYVVE PSAEEARDAF SARRIVEAGI LAESEGRPLQ KAIRKLRDHI ADEQRAIEGA 
DAATRAFLLA DFHVCLAEQM GHQLLVDVLR DLTARTTLAA TLYQSRHEAG QSCAEHGAIV 
AALEAGDTAR ARQLMIEHIG NVERSLEVET TAGPDAPARL RATLAPVALP RARR