| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3943 |
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| Symbol | |
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| ID | 7970372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4183568 |
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| End bp | 4185748 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794529 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002945823 |
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| Protein GI | 239816913 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.388599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCCCC TGCCTTCCCT CCCACCCGAC ACGCCCACGG CTCGCCCGCA CCGCGGCCGC
TGGCGCGCGC TGCTCGCGTG GACGGCCGCC GTGGCCGTCG CGCTGCTGCT GATCGGCGCG
GCAGGCCAGT GGGCTGCGGC CCGCGAGGCG AGCTTCCAGG CAGACTCGAT CCGCCGCGCG
ATGGAGGTCC ACGTGCTGGG CCTGCGCGAT GCCGCCGGCA AGTACGGCTA CCTGCCGCGC
ACCGCGGGCA TGCACCCGGA CGTCTTCGAG GTGCTGGCCC ATCCGCGCGA CCCGGCGGCG
CAGCAGCGCG CCAACCGCTA CATCGAAGAG GTGAACCGCC ACGCGGGCTC GGATGCGCTC
TACCTGATCG ACCTGCAGGG CCTCACGCTG GCGGCAAGCA ACTGGGCCAC GCCGCAGAGC
TTCGTCGGCG AGTCCTATGC CAACCGGCCC TACTTCATCG ACGCGCGCGC GGGCCGCAGC
GGCCTCTTCT ACGGCGTGGG CCAGACCACC GGAGAACCGG GGCTCTTCAT GTCCGCGCCG
GTACGCTCCG AGGCCGGCGC CGTGCTGGGC GTGCTGACGG TCAAGATCAG CCTGCGCCAG
CTCCAGGAGG CCTGGACCTT CGCGCGCGAG CCGATCCTCT TGGCCGATGC GCGCGGCATC
GTGTTCCTGA GCTCGGTGCC GGCCTGGATG TACCAGGCCA AGCGGCCGCT CGCCGCCGCC
GACCTCGACC GCCTGAAGCA CGAGCAGCAG TACGGCGCCC GCACCGGCTT CCCGCCGCTG
CCATGGACGG TGGCGCGCGA GAAAGGACAT CCGGGCTACC TCGTGCGCAC CGACATCGGC
GGCCAGGCGC GCCGCTTCCT CGCGCTGGAC GAGCCGCTGC CCGACCTGGG CTGGACGCTG
ACCGTGATGG CCGACCATTC GGAGGTCACC CGCGCGCGCG AGCGCACCTG GATGCTGGGC
CTGCTGTGCG CGGGCGTGCT GCTGCTGGGC GGGCTCTACT GGCAGCTGCG CGAGCGCCGC
TTTGCCGAGC AGCGCGACGC GCGGCGCGAC CTGGAGCTGC GGGTGCGCGA GCGCACGCAC
GCGCTGGACG AGGCCCACGC CTTCCGCAAG GCGATGGAAG ACTCGCTGCT GGTGGGCATG
CGCGCACGCG ACCTCGAAGG CCGCATCATC TATGTCAACC CCGCCTTCTG CGAGATGACC
GGCTACGGCG CCGACGAACT GCTCGGCCGG CTGCCGCCCT ACCCCTACTG GCACCCCGAC
GACGTGGCGC AGCACTGGCT GCATTACCAG GCGATGATGA GCGGGCAGCC TGCGCGCTCG
GGCTTCGAGT CGCGGCTGCG GCACCGCGAT GGGCACGAGG TCATCACCAT GGTCTACACC
GCGCCGCTGA TCGATGCCGA TGGCCGCCAC AGCGGCTGGA TGAGTTCGGT GGTCGACATC
ACCGAGCAGA AGCGCGCCGA GCTGCGCCAG CGCCAGAACG ACGAGCAGCT GCAGCATGCG
CAGCGCCTGG CCAGCCTGGG CGAGATGGCC TCCACGCTGG CGCACGAGCT GAACCAGCCG
CTGATGGCGC TGAGCAATTT CGCGAGCGCG GCCAAGGCCT TCGCGGAACA GGGCAACCAG
GCGCTGCTGG CCAGCAGCCT CGACGAGACC ATGGCGCAGG CCCGGCGCAG CGCCGAGATC
GTGCGGCGCA TCCGCGGCTT CGTGCGCCAG CGCACCATCG GCACCGAGGA TTGCGCGGTG
GCGTCGCTGG TCAGCAACGC GCTGGCGCTG CTGCAGGGCG AGATGCGGAT GCGCCAGGCG
CGCGCCGAGG TGCGCCTGCG GCCAGACCTG CCCGAGGTGC GCGGCGACCG CGTGCTGCTG
GAGCAGGTGC TGCTGAACCT GCTGTCCAAC AGCCTGCACG CCATGCAGGC CGCGCCGCCC
GAGCAGCGGC TGGTGGAAAT CGACGCCGAG GTGAGCGAAG GCCGCATGCA CATCCACGTG
GCCGACAGCG GGCCGGGCAT CGACGCGGCG CTGGCCGAGC AGGTGTTCGC GCCCTTCTTC
ACCACCAAGA CCGGCGGGCT CGGGCTGGGC CTGAACATCT GCCGCACCAT CGTGGAGGCC
CACCGCGGCC GGCTGTCCTT TGCCAACCGG GCCGGCGGTG GCACAGTTTT CACTCTCGAA
CTGGAAATCT CACCGCCGTG A
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| Protein sequence | MPPLPSLPPD TPTARPHRGR WRALLAWTAA VAVALLLIGA AGQWAAAREA SFQADSIRRA
MEVHVLGLRD AAGKYGYLPR TAGMHPDVFE VLAHPRDPAA QQRANRYIEE VNRHAGSDAL
YLIDLQGLTL AASNWATPQS FVGESYANRP YFIDARAGRS GLFYGVGQTT GEPGLFMSAP
VRSEAGAVLG VLTVKISLRQ LQEAWTFARE PILLADARGI VFLSSVPAWM YQAKRPLAAA
DLDRLKHEQQ YGARTGFPPL PWTVAREKGH PGYLVRTDIG GQARRFLALD EPLPDLGWTL
TVMADHSEVT RARERTWMLG LLCAGVLLLG GLYWQLRERR FAEQRDARRD LELRVRERTH
ALDEAHAFRK AMEDSLLVGM RARDLEGRII YVNPAFCEMT GYGADELLGR LPPYPYWHPD
DVAQHWLHYQ AMMSGQPARS GFESRLRHRD GHEVITMVYT APLIDADGRH SGWMSSVVDI
TEQKRAELRQ RQNDEQLQHA QRLASLGEMA STLAHELNQP LMALSNFASA AKAFAEQGNQ
ALLASSLDET MAQARRSAEI VRRIRGFVRQ RTIGTEDCAV ASLVSNALAL LQGEMRMRQA
RAEVRLRPDL PEVRGDRVLL EQVLLNLLSN SLHAMQAAPP EQRLVEIDAE VSEGRMHIHV
ADSGPGIDAA LAEQVFAPFF TTKTGGLGLG LNICRTIVEA HRGRLSFANR AGGGTVFTLE
LEISPP
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