| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3939 |
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| Symbol | |
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| ID | 7970368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4178674 |
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| End bp | 4179732 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794525 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_002945819 |
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| Protein GI | 239816909 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000297127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAA CCAAGGCCTT GAGGTCCGCG TTCGTCACCG GCGCGACCGG CCTTCTCGGC
AACAACCTGG TGCGCGAACT GGTCGCGCGC GGCGTCTCGG TCAAGGCCCT TGTCCGCTCG
AAGGCCAAGG GCCAGCAGCA GTTTGCGGGC GTGAAGGGCG TCGAACTGGT GCTGGGCGAC
ATGGCCGATG CGCCCGCCTT CGCCGGCGCG CTGCAAGGCT GCGACGTGGT GTTCCACACC
GCCGCGTTCT TCCGGGACAA CTTCAAGGGC GGCAGCCACT GGCAAGAGCT CAAGCGCATC
AATGTGGACG GCACGCGGCA GCTCATCGAG CAGGCCTACG GTGCGGGCAT CCGGCGCTTC
GTCCAGACCT CGTCCATCGC GGTGCTCAAC GGCGAGCCGG GCGTGCCCAT GGACGAGACC
TGCCTGCGCG AGCTGGCCGA CGCCGGCGAC GACTACTACC GCAGCAAGAT CATGGCCGAC
CAGGTCGTGT CGGCCTTTCT GGGCACGCAC CCGGACATGC ATGCGAGCTT CGTCCTGCCC
GGATGGATGT GGGGACCGGC CGATATCGGC CCCACCTCGT CAGGACAATT CGTCAATGAC
GTGGTGCTCG GAAAACTGCC CGGGCTGGTG CCCGGCAGTT TTTCCGTCGT CGACGCCCGC
GATGTGGCCA GGGCGCAGAT CTCGGCCGCG GAGCACGGGC AGCGCGGCGA ACGCTACCTG
GCGGCCGGCC GCCACATGAC GATGCAGGAA CTGGTTCCCC TGGTGGGAAA GATCGCAGGC
ATCAAGACGC CGACGCGCCA TTTGCCCTTT CCGCTCCTGT ATCTGCTGGC GGCGGTGCAG
GAGCTCTACG CGCGGACCAC CGGCAAGCCC ATCCTGCTCA GCCTGGCCAC CGTGCGGCTG
ATGCGCAAGG AGGCGGGGCG CAGCCATTTC AATCACACGA AGAGCGAGCA GAAGCTTCAG
CTGAAGTTTC GCCCGGTCGA GCAGACCGTT GCCGACACGC TCGCCTGGTA TCGCGGCAAT
GGCTGGCTGC CCGGTGTGCC GGCCCGAACC GAATCCTGA
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| Protein sequence | MEKTKALRSA FVTGATGLLG NNLVRELVAR GVSVKALVRS KAKGQQQFAG VKGVELVLGD
MADAPAFAGA LQGCDVVFHT AAFFRDNFKG GSHWQELKRI NVDGTRQLIE QAYGAGIRRF
VQTSSIAVLN GEPGVPMDET CLRELADAGD DYYRSKIMAD QVVSAFLGTH PDMHASFVLP
GWMWGPADIG PTSSGQFVND VVLGKLPGLV PGSFSVVDAR DVARAQISAA EHGQRGERYL
AAGRHMTMQE LVPLVGKIAG IKTPTRHLPF PLLYLLAAVQ ELYARTTGKP ILLSLATVRL
MRKEAGRSHF NHTKSEQKLQ LKFRPVEQTV ADTLAWYRGN GWLPGVPART ES
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