| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3929 |
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| Symbol | |
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| ID | 7970358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4168589 |
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| End bp | 4169824 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794515 |
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| Product | peptidase M20 |
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| Protein accession | YP_002945809 |
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| Protein GI | 239816899 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.856117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACT ACGCCAAGCT CGACGCCTGG ATCGACGCCC ACTTCGACGA GGAAGTGCGG
TTCCTGCAGC AACTGGTGCA GGTGCCCACC GACACGCCGC CCGGCAACAA CGCGCCGCAC
GCCGAGCGCA CGGCCGAGCT GCTGAAGGAC TTCGGCCTGG ACGCCGAGAA GCACGCCGTG
CCCGCGCAGG AAGTGAAGGA CTACGGCCTC GAGTCGATCA CCAACCTGAT CGTGCGCCGC
AAGTACGGCA AGGACGGCGA CGGTGGCCGC ACCGTGGCCC TGAACGCCCA CGGCGACGTG
GTGCCTCCCG GCGAAGGCTG GACGCACGAT CCGTACGGCG GCGAGATTGC CGACGGCAGC
CTCTACGGCC GCGCCGCCGC CGTGAGCAAG AGCGACTTCG CGAGCTTCAC CTTTGCGCTG
CGCGCGCTCG AAGCCGTGGC CAGGCCCGCC AAGGGCAGCG TCGAGCTGCA CTTCACCTAC
GACGAGGAAT TCGGCGGCAT CCTCGGCCCG GGCTGGCTGC TCAAGCAAGG CCTGACCAGG
CCCGACCTGA TGATCGCGGC CGGCTTCAGC TACGAAGTGG TCACCGCGCA CAACGGCTGC
CTGCAGATGG AAGTGACGGT GCACGGCAAG ATGGCCCACG CCGCCATCCC CACCACCGGC
GTCGATGCGC TGCAGGGCGC GGTGAAGATC CTCAACGCGC TCTATGCGCA GAACACGCTC
TACCAGCAGG TGACCTCGAA GGTCGAGGGC ATCACGCACC CGTACCTCAA CGTGGGCCGC
ATCGAAGGCG GCACCAACAC CAACGTGGTG CCCGGCAAGG TGGTGTTCAA GCTCGACCGC
CGCATGATCC CCGAGGAGAA CCCCGTCGAG GTCGAAGCCA CGATCCGCAA GGTGATCGCC
GATGCGGCCG CGGAAAGCAC CGGCATCACG GTCGAGATCA AGCGCCTGCT GCTCGCCAAT
TCGATGAAGC CGCTGGCCGG CAACAAGCCG CTGGTCGATG CGATCCAGAA GCACGGCCAG
CAAGTGTTCG GTGAGCCCAT CAAGGCCATG GGCACGCCCC TGTACACCGA CGTGCGCCTC
TACGGCGAAG CCGGCATTCC GGGCGTGATC TACGGCGCCG GCCCGCGCAC CGTGCTCGAA
TCGCATGCCA AGCGCAGCGA CGAACGCGTG GTGCTCGAAG ACCTGCGCCG CGCCACCAAA
GTGATCGCGC GCACGCTGAG CGACCTGCTG GCCTGA
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| Protein sequence | MTDYAKLDAW IDAHFDEEVR FLQQLVQVPT DTPPGNNAPH AERTAELLKD FGLDAEKHAV
PAQEVKDYGL ESITNLIVRR KYGKDGDGGR TVALNAHGDV VPPGEGWTHD PYGGEIADGS
LYGRAAAVSK SDFASFTFAL RALEAVARPA KGSVELHFTY DEEFGGILGP GWLLKQGLTR
PDLMIAAGFS YEVVTAHNGC LQMEVTVHGK MAHAAIPTTG VDALQGAVKI LNALYAQNTL
YQQVTSKVEG ITHPYLNVGR IEGGTNTNVV PGKVVFKLDR RMIPEENPVE VEATIRKVIA
DAAAESTGIT VEIKRLLLAN SMKPLAGNKP LVDAIQKHGQ QVFGEPIKAM GTPLYTDVRL
YGEAGIPGVI YGAGPRTVLE SHAKRSDERV VLEDLRRATK VIARTLSDLL A
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