Gene Vapar_3926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3926 
Symbol 
ID7970355 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4165146 
End bp4165820 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content67% 
IMG OID644794512 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002945806 
Protein GI239816896 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.173644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACA TGGAGTCCTC CACCACCCGT TCGATCGTCG ACGCGCTCAC CAAGGCGATC 
GTCGACCACC GGCTGCAGCC CGGCACCAAG CTGGCCGAGC AGAAGCTGGC CGACCACTTC 
GGCGTGTCGC GCACGCTGGT GCGCCAGGCG CTGTTCCAGC TGTCGCAGAA CAAGCTCATC 
CGCCTGGAGC CCGCGCGCGG CGCCTTCGTG GCAGCGCCGG CCGTCGACGA AGCCAGGCAG 
GTGTTCGCGG TGCGCCGCAT GCTCGAGGCC GAGATGACGC GCGAGTTCGT GCGCACCGTC 
ACGCCGGCCA AGATCAAGGC GCTCAAGGAG CACGTGGCAC TCGAAAAATC CGCGGTGTCG 
GGCGAGGACA TCTCGGGCCG CACCGAGCTG CTCGGCGACT TCCACGTGCG CATGGCCGAG 
CTCATGGGCA ACCAGGTGCT GGCGCAGATC CTCGGCGAGC TGATCTCGCG CTGCGCCCTC 
ATCACGCTCA TGTACCAGAG CACCAGCGCG GCCGAGCACT CGAACGACGA GCACGCCGAC 
ATCGTGAAGG CGCTGGCCGC GCGCGACGAG GAGCGCGCCG TGCGCCTCAT GACCGAACAC 
CTGGAACACG TCGAAGCCAA CCTCACCTTC GACCGCAAGG TGCCCACCAA CGACATCTCG 
CTCGCCCTGT CCTGA
 
Protein sequence
MKNMESSTTR SIVDALTKAI VDHRLQPGTK LAEQKLADHF GVSRTLVRQA LFQLSQNKLI 
RLEPARGAFV AAPAVDEARQ VFAVRRMLEA EMTREFVRTV TPAKIKALKE HVALEKSAVS 
GEDISGRTEL LGDFHVRMAE LMGNQVLAQI LGELISRCAL ITLMYQSTSA AEHSNDEHAD 
IVKALAARDE ERAVRLMTEH LEHVEANLTF DRKVPTNDIS LALS