Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3896 |
Symbol | |
ID | 7970325 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4127988 |
End bp | 4129181 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794482 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_002945776 |
Protein GI | 239816866 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00515668 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTTCG ACACCCCGAA CGACGACGCA CGCCTGCCCG CACGCAGCGG CCCCACCGGC CCGCTCAGCG GCCTGCGCGT GCTCGACCTC AGTGCCTACA TCGCGGGCCC GTACGGCTGC TCGCTGCTGG CGGACCAGGG GGCCGAAGTC ATCAAGATCG AGCCGCCCAC GGGCGACAAC CTGCGCAAGT ACCCGTCGAC GCTCGAAGCC GAGAGCCGCG CCTTCATCGG CGTGAACCGC AGCAAGCTCG GCGTGGTGCT CGACCTGAAG AAGGCCGACG GCCTTGCCGC GCTGATGGCG CTGGTGCGCA CGGCCGATGT GCTGGTGCAC AACTTCAGGC CCAGCGTGCC GCCGCGGCTG GGCATCGCCT ATGAACAGCT GAAGGAGATC AATCCGCGCC TGATCTATTG CAGCCTCACG GGCTATGGCG AAACCGGTCC GCTGCGCGAG AAGGCGGGCT ACGACCAGGT GCTGCAGACC ATGACCGGCA TGTGCGCGCT GCAGGGCAAG CGCGGCGAGC CGCCCGAGAT CATCTATGGC TCGGTGGTCG ACTATTACGC GGCCGCGCTG GTGGCCGCGG GCGTGGCCTC GGCGCTGTAC GAGCGCGAGA AAAGCGGCCA GGGCCAGTTC GTCGGCGTGT CGCTGCTGCG CTCCGCGCTC ACGATGCAGT CGGCGCGCAT GGTGTGGGCC GAGGGCGAGC CCAAGGACGT GGGGCGCGAC ATGCGCTCGG GCGGCATCAC CGGCATCCAT CCGACGCGCG AGGGGCATCT CTACATCTCG GCCAACACGC CGCATTTCTG GCGCGCGCTG TGCGACAAGG TGGGCCTGTC CGAACTCGCG GCCGACGAGC GCTACGACTC GGTGCGCAAG CGCGCGCAGC ATTTTGCCGA GATCGTTCCG CTGCTGCGCG AGGCGCTGGC CGCACGCAGC GCGCTCGAGT GGGAGGAACT GTTCGGCGAG GAGGTGCCCT GCGCCGCAGC GCGCACGGTC GAGGACATGT TCGACAACGA GCAGGTGCTG GCCGAGGACA TGGTGGCGAC CTTCGCGCAT CCCACGCTCG GCTCCTACCG CGGCTTCACG CGGCCGGTGC AGTTCGGCCG CACGCCCGGC CCGGAGCCCT TTGCGGCGCC CACGCTGGGG CAGCACACGC AGGCGGTGCT GGCGGCGCGC AAGGCCGCGG ACGCGGCCGG CTGA
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Protein sequence | MSFDTPNDDA RLPARSGPTG PLSGLRVLDL SAYIAGPYGC SLLADQGAEV IKIEPPTGDN LRKYPSTLEA ESRAFIGVNR SKLGVVLDLK KADGLAALMA LVRTADVLVH NFRPSVPPRL GIAYEQLKEI NPRLIYCSLT GYGETGPLRE KAGYDQVLQT MTGMCALQGK RGEPPEIIYG SVVDYYAAAL VAAGVASALY EREKSGQGQF VGVSLLRSAL TMQSARMVWA EGEPKDVGRD MRSGGITGIH PTREGHLYIS ANTPHFWRAL CDKVGLSELA ADERYDSVRK RAQHFAEIVP LLREALAARS ALEWEELFGE EVPCAAARTV EDMFDNEQVL AEDMVATFAH PTLGSYRGFT RPVQFGRTPG PEPFAAPTLG QHTQAVLAAR KAADAAG
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