Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3879 |
Symbol | |
ID | 7969736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4109052 |
End bp | 4109939 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644794465 |
Product | protein of unknown function zinc metallopeptidase putative |
Protein accession | YP_002945759 |
Protein GI | 239816849 |
COG category | [R] General function prediction only |
COG ID | [COG2321] Predicted metalloprotease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATGGG AAGGCAACGA ACAATCCGAG AACGTGGAAG ACCGCCGCGG TGAAGACGGC GGCGGCGGTG GCGGCGGCTT CATCGGCGGG CGCAGCATCG GCATCGGCAC CATTGCCGTG GCGCTGATCG CAGGCTGGAT CTTCGGCATC AATCCGCTGA CCGTGCTGAG CCTGCTGAGC GGCGGCGGTG GCGAACAGGT GCAGGTGCAG CAGCAGCAAG GCCCTGCGCC CAAGCCGCCC TCGAACGACC GCGAAGCGGC CTTCGTCTCG ACCGTGCTGC GCAACACCGA GGTGGTGTGG AGCGGCATCT TCCGGCAGAA CGGCGGCAGC TACCAGCCGC CGCGGCTCGT GCTGTTCCGC GGCGCCACGC CCACGGCATG CGGCACCGGC CAGGCGGCGA TGGGGCCGTT CTACTGCCCC GGCGACAAGA AGGTCTACAT CGACCTCGCC TTCTACGACA CGCTCAAGAA CCAGCTCGGC GCGCCCGGCG AATTCGCGCA GGCCTACGTC ATTGCGCACG AGGTCGGCCA CCACGTGCAG GACGAGCTCG GCGTGACCGC CAAGGTCGAC GGCATGCGCG GGCGCCTGAG CCAGTCGCAG AACAACGCGC TGAGCGTTCG CGTCGAGCTG CAGGCCGACT GCTTTGCCGG CATCTGGGCG CACCATTCGC AGGAGTCGAA GAAGTGGCTC GACCCGGGCG ACATCGAGGC CGCGATGAAT GCCGCGCAGA AGATCGGCGA CGACGCGCTG CAGCGTTCCG CGGGCCGCGC CGTGGTGCCC GACAGCTTCA CCCACGGATC GAGCGCGCAG CGCCAGCGCT GGTTCGGCGC GGGCTATCAA AGCGGCGATG TCAAGTCCTG CGACACCTTC AATGCACGCA ATCTTTGA
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Protein sequence | MRWEGNEQSE NVEDRRGEDG GGGGGGFIGG RSIGIGTIAV ALIAGWIFGI NPLTVLSLLS GGGGEQVQVQ QQQGPAPKPP SNDREAAFVS TVLRNTEVVW SGIFRQNGGS YQPPRLVLFR GATPTACGTG QAAMGPFYCP GDKKVYIDLA FYDTLKNQLG APGEFAQAYV IAHEVGHHVQ DELGVTAKVD GMRGRLSQSQ NNALSVRVEL QADCFAGIWA HHSQESKKWL DPGDIEAAMN AAQKIGDDAL QRSAGRAVVP DSFTHGSSAQ RQRWFGAGYQ SGDVKSCDTF NARNL
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