| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3865 |
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| Symbol | |
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| ID | 7969722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4094352 |
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| End bp | 4095317 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794451 |
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| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
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| Protein accession | YP_002945745 |
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| Protein GI | 239816835 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCAC ATCTCAACCG ATCGCGCCGA CAGCTCCTCG CAAGCGGCCT TGCCGCTGCC
GTGGCCTTGC CTGTTTTCTC ATTGCAGGCC CGCGCACAGG GCCGCCCCGT TCTCAAGGCC
GGCGACCAGA AGGGCGGGCT GCGCGCGCTG CTCGAAGCGG CCGGCGGACT CGAAGGCCTT
GGCTATGACA TCCAGTGGTC GGAATTCCCC GCCGCTGCGC CGCTGGCCGA AGCGCTGAAC
GCCGCGGCGG TCGATTCCGG ACCCATCGGC GATGCGCCGC TCATCTTTGC GCTTGCGGCC
GGCACGCGCG TCAAGGCCAT CGGCGCGAAC CGTTCGGATT CGTACGGCAC GGCTGTGCTG
GTGCGGCCCG ATTCGCCGCT CAAGACCGCG GCCGATCTCA AGGGCAAGAG CATCGCGACC
AACCGCGGCT CCATCGGCCA CTACGTGACG CTCAAGGCCA TCACCGCGGC GGGACTCAAG
CCCGAGGAGG TCAACATCCG CTTCCTTGCG CCGGCCGACG CCAAGCTCGC GCTCACGCAG
GGCTCGGTCG ATGCCTGGGC CACCTGGGAG CCCTACACCG CGCTGGCCGA GGTCAGCCGC
CACGCGCGCG TGCTCGTGAG CGGTCGCGGG CTGCTGCCGG GGCTCAGCTA CCTCGCGGCC
ACCGATGCCG CCATTGCCGC CAAGCGGCCG GTGCTGCAGG ACTTTCTGCA GCGCGTGGTC
AAGGCCCAGC TCTGGTCGTA CCGCAACGCC GATGCCTACT CGGCCGCACT GGCCCGCATC
ATCGGCATTC CGCCCGAAGC GGCCAAGCTG CAGTTCGAGC GGCGCCAGCA GAGGTGGATA
CCCATCGATG CACAGGTCAT CGCCGACCAG CAGGGCACGG CGGATTTCTA CCGGCAGGTG
GGGCTCATCA GGCAGCCGCT GGATGTGAAG GGGACGTTCG ACACGGGGTT TGGTGTGGCG
GGCTGA
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| Protein sequence | MNPHLNRSRR QLLASGLAAA VALPVFSLQA RAQGRPVLKA GDQKGGLRAL LEAAGGLEGL
GYDIQWSEFP AAAPLAEALN AAAVDSGPIG DAPLIFALAA GTRVKAIGAN RSDSYGTAVL
VRPDSPLKTA ADLKGKSIAT NRGSIGHYVT LKAITAAGLK PEEVNIRFLA PADAKLALTQ
GSVDAWATWE PYTALAEVSR HARVLVSGRG LLPGLSYLAA TDAAIAAKRP VLQDFLQRVV
KAQLWSYRNA DAYSAALARI IGIPPEAAKL QFERRQQRWI PIDAQVIADQ QGTADFYRQV
GLIRQPLDVK GTFDTGFGVA G
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