Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3858 |
Symbol | |
ID | 7969715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4082109 |
End bp | 4083584 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644794444 |
Product | transcriptional regulator, GntR family with aminotransferase domain |
Protein accession | YP_002945738 |
Protein GI | 239816828 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGGC CACCCCGCAA TGCCACCGCC ACCGCATGGC TCGAATCCCC GCTCGCCAGG GAGCGCGAGG CCGGCCCGAT GCAGCGCCAG CTGCACGAGC GCCTGAAGCG CGCCATTCTC GATGGCGGCC TGGCGCCGGG CAGCCGGCTG CCCGGTTCGC GCGCGCTGGC CGAGGCGCTC TCGGTTTCCC GCAACACCGT CACCGCGGCC TACGAGCACC TGGCGGCCGA AGGCTATGTG CAGCCCGACC GGCAGGGCAC GCGCGTGACC GAGCTGGCGC CCGCAAAGGT CATGCGTGCC GCCAGATCCG GCGCTGCACC GGCCACGGCA CGGCGGCTCG CACGCATCCA GCCTGGCACG CCCCGCGCCG AGATGGACGC CGCCCTGCGG CCTGGCATGC CCGCGCTCTC GCACTTTCCC GCGGCCGCAT GGCGCCGCGC CGTCGACCGT GCGATCCGCA GTGCCAGCCC CGCCACGCTC GGCTATGGCG ATCCGCTCGG CGAACCGCCG CTGCGCGCGG CCATCGCGCG GCACCTGGCG ATTGCGCGCG GCGTGCGCTG CGAGCCGCAC CAGGTCGTGA TCGCCGAGGG CGCGCAGGAA GCCATTGCGC TGTGCGTGCG GCTGCTGTCG AACCCCGGCG ATACGGGATG GGTCGAAGAC CCGGGCTACC GCGGCGCGAG GGCAGCGATG CATGCCGGCG ACATGCGCAT CGTGCCGATG CGCGTCGATG CCGAAGGCCT GTGCACGAGC GAACGCGACT GGCACAGGCA CCCGCCCCGG CTGGTCTACG CCACGCCTTC GCACCAGTAC CCGGCCGGTG CGGTGCTGAG CATCGCGCGC CGGCTGGCGC TGATCGCACA GGCGCGCCGC CACGGCGCCT GGATCATCGA GGACGACTAC GACAGCGAGT TCCGCCACAC CGGCGAACCC ATCGGCGCGA TGCAGGGCTT GGTGAACGAC GCGCCGGTGC TCTACGTGGG CACCTTCAGC AAGACGATGT TTCCATCGCT GCGGCTGGGC TTCGTGGTGC TGCCCGCGCC GCTCATGGCC ACGGTGCAGA AGCCGCTCGA GGAAATGCTG CGCGGCGGGC ACCGCCACGA GCAGCTGGCG ATGGCCGACT TCATCGAGAG CGGCCAGTTC AGCCGGCACC TGGGCCGCAT GCGGCGCCTT TACCGCGAGC GGCAGCAGGC GCTGCGGCTG GCGCTCGCAC GGCACTTCAA GGTGCCGCAC GAGATCGACG GCGGCTACTG CGGACTGCAC CTCACGGTGC GGCTGCCGCC GCGCTTCGAC GACCAGCGCA TCGCCGCCGA TGCGCTGCGC CACCGGCTCG CGCCCACCGC GCTGTCGAGC TTTGCGATGC GGCCGCGGCC TTCGGACAAC GGATTGGTGC TGGGCTATGG CAACACATCG GCGGAGCTCT TCGAGCCGCT GGTCAAAAGA CTGTCGCAGC TGGCGCGTGC GGCGGAACGC AATTAA
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Protein sequence | MSRPPRNATA TAWLESPLAR EREAGPMQRQ LHERLKRAIL DGGLAPGSRL PGSRALAEAL SVSRNTVTAA YEHLAAEGYV QPDRQGTRVT ELAPAKVMRA ARSGAAPATA RRLARIQPGT PRAEMDAALR PGMPALSHFP AAAWRRAVDR AIRSASPATL GYGDPLGEPP LRAAIARHLA IARGVRCEPH QVVIAEGAQE AIALCVRLLS NPGDTGWVED PGYRGARAAM HAGDMRIVPM RVDAEGLCTS ERDWHRHPPR LVYATPSHQY PAGAVLSIAR RLALIAQARR HGAWIIEDDY DSEFRHTGEP IGAMQGLVND APVLYVGTFS KTMFPSLRLG FVVLPAPLMA TVQKPLEEML RGGHRHEQLA MADFIESGQF SRHLGRMRRL YRERQQALRL ALARHFKVPH EIDGGYCGLH LTVRLPPRFD DQRIAADALR HRLAPTALSS FAMRPRPSDN GLVLGYGNTS AELFEPLVKR LSQLARAAER N
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