Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3820 |
Symbol | |
ID | 7969677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4037933 |
End bp | 4038874 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644794406 |
Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
Protein accession | YP_002945700 |
Protein GI | 239816790 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.550889 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGGCA TCATGAAGCG GATAGTGATT GCGGAGTTCA TGGACGCCGC CGCGGTTGCG CAGTTGCGCG AGCGGCACGA CGTTCTCTAC GACGTGGCGC TGGTGGACGA CGGCGCCCGG CTCTACAAGG AAGCGAAATG GGCCCATGCG CTCATCGTGC GCAACCGCAC GCAGGTGCGC GGCGAACTGC TGGATGCGCT CACGCAGTGC ACGGTAGTGG GCCGCCTGGG CGTGGGCCTG GACAACATCG ACGTGGCGGG CTGCGAAGCA CGCGGCATCC GGGTGATTCC GGCCACGGGC GCCAATGCAC TGAGCGTGGC CGAGTACGTG ATCGCGAGCG CCATGCTGCT GCTGCGCGGC GCCTACGGCT CCACCGCCGC GGTGGCGGCG GGGCGCTGGC CGCGCAATGC GCTGTCGAAC GGGCGCGAGC TCGCGGGCAA GACGCTCGGG CTGGTCGGCT TCGGCGCCAT CGGGCAGCTG ACGGCGCGGC TTGCGCAGGC GCTCGGCATG CGCACGGTGG CTTTCGACGC CATGATGGAC GGCAGCCACC CGGCCTTCGC CGCAACGGGC ACGCAGCCAC TGGGCCTCGA TGCGCTGGTG GCGCAGGCCG ACGTGGTGAG CCTGCATGTG CCGCTGGTAG ACGGCACGCG CAACCTCTTC CATGCGGCGC GCATCGCGGC CGTGAAGGGC GGCGCGGTGC TCGTCAACAC CTCGCGCGGC GGCATCGTCG ACGAAGCCGC CGTGGCGCTT GCGCTGCGCG AAGGCCGGCT CGGCGGCGCG GCGCTCGATG TGTTCGAGGC CGAGCCGCTC GCGGCCAGCC CGCATTTCGA GGGCTGCCCC AACCTGCTGC TGACACCGCA CATCGCGGGC GTGACGGCCG AGTCGAACGA GCGCGTGAGC AGCCTCATTG CACAGAAGGT GCTGGAGGCG CTGGAACCAT GA
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Protein sequence | MAGIMKRIVI AEFMDAAAVA QLRERHDVLY DVALVDDGAR LYKEAKWAHA LIVRNRTQVR GELLDALTQC TVVGRLGVGL DNIDVAGCEA RGIRVIPATG ANALSVAEYV IASAMLLLRG AYGSTAAVAA GRWPRNALSN GRELAGKTLG LVGFGAIGQL TARLAQALGM RTVAFDAMMD GSHPAFAATG TQPLGLDALV AQADVVSLHV PLVDGTRNLF HAARIAAVKG GAVLVNTSRG GIVDEAAVAL ALREGRLGGA ALDVFEAEPL AASPHFEGCP NLLLTPHIAG VTAESNERVS SLIAQKVLEA LEP
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