| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3809 |
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| Symbol | |
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| ID | 7969666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4022541 |
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| End bp | 4025546 |
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| Gene Length | 3006 bp |
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| Protein Length | 1001 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794395 |
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| Product | glycosyl transferase family 51 |
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| Protein accession | YP_002945689 |
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| Protein GI | 239816779 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.662369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGGT TCAAGAAGGT CTTCTGGATC GGCACTGGGC TCGCCGTGGT AGGCGCGCTT
GCCGCTTTTG CGGTGGTCGA CGAGCTGAAG ACCTCCCGAT GGCAATCGGC CCTGTGGCGC
GACTTTGCCA GCGGCGCGGG CTTCAGCGTC GGCGACGGCG CCAGCGACGC CATCCGCTTT
CCCCATTCCG GGCCGTACGA CGCGCGGCTC GGCTACCACG ATCTTCCCGA CTTCATCGAA
CGCCTGCAGC CGCGGGGCTT TGCCATCACG CGCCAGGCGC GCATGTCGCC GCGGCTGGTC
GAACTGCAGG AGCGCGGGCT TTTCACGCCC TACCGCGAGA AGAACCAGGC CGGCCTGACG
GTGCGCGACT GCCGCAACAC GGCGCTGCTG CACACGCGCG TGCCCCAGCG CGCCTACGAG
CGTTTTGAAG ATGTGCCGCC GCTGCTGGTG AGCGCCCTGC TGTTCGTCGA GGACCGCCAC
CTGCTCGATG CGGAACCGGC GCAGCGCAAC CCCGCGCTGG ATCCGGAACG CTTTGCCAAG
GCCGCGGTCG AGCAGGGGCT GCGGGTGTTC AGCCCGGGCG CGACCGCGAC CGGCGGCAGC
ACGCTGGCCA CGCAGATCGA AAAGTACCGC CATTCGCCGC AGGGCCGCAC CGGGTCGGTC
CGCGAGAAGC TGCGCCAGAT GGCCTCGGCC TCGGTGCGCG CCTACCAGGA TGGCGACGAC
ACGCTCGCGC GGCGCCGCCA GATCGTCGTC GACTACCTCG ACACGGTGCC GCTGGCCGCG
CGCCCGGGCA TCGGCGAAGT GCACGGCATG GGCGATGGCC TGTGGGCCTG GTACGGGCGC
GACTTCCGCG AGGTCAACCG CCTGCTCGCC GACAACGCGG AAGGGGCGAC CACGCCCACG
CCCGAGGCGC TCCAGCGCCA GGCCGAGGCC TTCAAGCAGG CGCTGTCGCT GATGATCGCG
CAGCGCCGCC CTTCGCAGCA CTTGCTCGGC GACGGCACTG GCCTGGCGCG GCTGACCGAC
AGCTACCTGC GGCTGATGGG CGATGCGGGC CTGATCGCGC CCACGCTGCG CGATGCGGCG
CTGCCGCTGC CGCTGAATCT GCGGCCCGAA CTGCCGACCA GGCCGCGCAC GGACTTCGTG
CAGCGCAAGG CCACCATCGC GCTGCGAACC CACATCTCCA CGCTGCTCGA CGTGCCGCGC
GCCTACGACC TGGAACGGCT CGACCTGGAG GCTGAAACCA GCCTGGACGG CGAAGCGCAG
GCGCTGGCGG CGCAGGTGCT GACCGGCCTG CGCACGCCCG CCGCCGCCAA GGCCGCGGGC
TTGTTCGGCG CCCACATGCT CGACCCGGGC GCGGACCCGG CCCCGCTGAT CTACAGCTTC
ACGCTGTTCG AGCGCGGCGC CCAGGCCAAC CTGCTGCGCG TGCAGGCCGA CAACATCAAC
CAGCCTTTCG ACGTGAACCA GGGCGCGCGG CTGGACCTGG GTTCCACCGC CAAGCTGCGC
ACGCTGGTGA GCTACCTCGA GATCGTGGCC GAGCTGCATG CCCGCTGGTC GGACCTGGGC
GCCGCCCAAC TGTCGGCGCT GCCGAACAAC CCGCGCGATC CGCTCGGTGC CTGGGCGCGG
CAGTACCTGC TGCGCGCCAA GGACCGCCGA CTCACGCCGA TGCTCGAGGC GGCCATGGAG
CGCAAGTATT CGGCGAACCC CGGCGAATCG TTCTTCACCG GCGGCGGCCT GCACCAGTTC
GAGAATTTCG AGCGCTCGCG CAACAGCGAA TCGATGACGG TGCGCGAAGG CTTCAAGCAC
TCGGTCAACC TGGTGTTCAT CCGCCTGATG CGCGACGTGG TGCGCCACCG CATGTTCGGC
GGCGCAGCGG ATGCCGAGAC CCTGCTGAAG GACCCGGCCG ACCCGCGCCG GCGCGAGATG
CTCGAGCGCT TTGCCGAGCG CGAAGGCTCG GCCTACCTGA TCCGCTTCTA TCGCAAGTAC
CAGCGCCAGT CGGCCGCGGG CGCCGAGGCA CTGCTGCTCC GCAGCCTGAA GCCGTCGGCG
CCGCGCCTGG CAAGCGCGCT GTTCACGATC GAGCCCGGGG CCAGCGAAGA ACGGCTCGAC
GAGCTGCTCA CGCAGCGGCT GGGCAAGGGC GCCGGCTCGC CGCGTGCACT GCGGGCGCTG
CACACCACCT ACTCGGGCCT GTCGCTCGCG GACCGCGGCT ACGTCGCGCG CGTGCATCCG
CTCGAACTCT GGCTGGTGGG ATACCTGCGG CGCCATCCCG GCGCAACACT GACCGAGGTG
CTCGACGCGA GCGCGAGCGA ACGCCAGGAG GTCTACGCCT GGCTCTTCAA GACGCGGCAC
AAGAGCGCAC AGGACAAGCG CTTGCGCGAG CTGGTCGAGC TCGATGCGTT CGCGGAAATC
CATCGCTCGT GGCAGCGCCT GGGTTACCCC TTCGAGTCGC TGACGCCGTC CTATGCGAGC
GCCATCGGCG CCTCGGGCGA CCGGCCGGCC GCCCTGGCGG AACTGATGGG CATCATCGCC
AGCGACGGCG TGCGACGGCC GGTGCAGCGC GTCGGCGCAC TGCACTTTGC GCGCGACACG
CCCTACGAGA CGCGGCTCGA GGCGCAAGGC GCGGGCGCCG AGCGCGTGCT GCCCGCCGAA
GTGGCCGCAA CGCTGCGCCG CGCGCTGGTG CAGGTGGTGC AGGACGGCAC GGCGCGGCGC
CTGAAGGATG CCCTGGTGGA CGCGAACGGC CGCGCGATAG AGATCGGCGG CAAGACCGGC
ACCGGCGACC ACCGCTACGG CCACAACGGC CGCGGCGCAG GCGCGGGCCC GGAGCGCAAG
ATCAGCCGCT CGGCCACCTT CGTGTTCACC ATCGGCGACC GCTACTTCGG CACCATCATG
GCCTACGTGA ACGAGCCCTA CGCCGCCCGC TACCGGTTCA CGAGCGCACT GCCGACGCAG
CTGCTGAAGT CGCTCGGGCC GCAACTGCTG CCGGTGCTGG AGCGCGGGGG GTGTGGAGGG
GATTGA
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| Protein sequence | MTRFKKVFWI GTGLAVVGAL AAFAVVDELK TSRWQSALWR DFASGAGFSV GDGASDAIRF
PHSGPYDARL GYHDLPDFIE RLQPRGFAIT RQARMSPRLV ELQERGLFTP YREKNQAGLT
VRDCRNTALL HTRVPQRAYE RFEDVPPLLV SALLFVEDRH LLDAEPAQRN PALDPERFAK
AAVEQGLRVF SPGATATGGS TLATQIEKYR HSPQGRTGSV REKLRQMASA SVRAYQDGDD
TLARRRQIVV DYLDTVPLAA RPGIGEVHGM GDGLWAWYGR DFREVNRLLA DNAEGATTPT
PEALQRQAEA FKQALSLMIA QRRPSQHLLG DGTGLARLTD SYLRLMGDAG LIAPTLRDAA
LPLPLNLRPE LPTRPRTDFV QRKATIALRT HISTLLDVPR AYDLERLDLE AETSLDGEAQ
ALAAQVLTGL RTPAAAKAAG LFGAHMLDPG ADPAPLIYSF TLFERGAQAN LLRVQADNIN
QPFDVNQGAR LDLGSTAKLR TLVSYLEIVA ELHARWSDLG AAQLSALPNN PRDPLGAWAR
QYLLRAKDRR LTPMLEAAME RKYSANPGES FFTGGGLHQF ENFERSRNSE SMTVREGFKH
SVNLVFIRLM RDVVRHRMFG GAADAETLLK DPADPRRREM LERFAEREGS AYLIRFYRKY
QRQSAAGAEA LLLRSLKPSA PRLASALFTI EPGASEERLD ELLTQRLGKG AGSPRALRAL
HTTYSGLSLA DRGYVARVHP LELWLVGYLR RHPGATLTEV LDASASERQE VYAWLFKTRH
KSAQDKRLRE LVELDAFAEI HRSWQRLGYP FESLTPSYAS AIGASGDRPA ALAELMGIIA
SDGVRRPVQR VGALHFARDT PYETRLEAQG AGAERVLPAE VAATLRRALV QVVQDGTARR
LKDALVDANG RAIEIGGKTG TGDHRYGHNG RGAGAGPERK ISRSATFVFT IGDRYFGTIM
AYVNEPYAAR YRFTSALPTQ LLKSLGPQLL PVLERGGCGG D
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