| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3789 |
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| Symbol | |
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| ID | 7970949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4004298 |
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| End bp | 4005122 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794375 |
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| Product | lipoprotein, YaeC family |
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| Protein accession | YP_002945670 |
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| Protein GI | 239816760 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
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| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAACC TCTTTCGCCG CCGCAGCCTC GTCCTTGCCA CGCTGGCCGC CTCCCTCATC
TTCTGCGGCA GCGCCGCCTT CGCGCAGGAC AACGGCAACA AGAACACCGT CAAGGTCGGC
ATCTCGGTCG GCAGCGCCGA GCAGGTGTTC GAGGTGGTGA AGAAGGTGGC CGCCAAGGAC
GGCCTGAACA TCCAGCTCGT GGTGTTCAAC GACTACCAGC TGCCCAATGC CGCGCTGGCC
TCGGGCGACC TGGACGCCAA CGCCTTCCAG CACCAGCCCT TCCTGGACAA CCAGAACAAG
GCGCGCGGCT TCGACATCGT GCCCGTGGGC CTCACCATCA CCGCGCCGCT GGGCTTCTAC
TCGCGCAAGA TCAAGTCGAT CGACCAGCTG CCCGACGGCG CGGCGGTCGG AATCCAGAAC
GACCCGTCGA ACGGCAACCG CGCCCTGCTG CTGTTGCAGT CGGCCGGTCT CATCACGCTG
AAGCCCGAGG CGGTGAAGAA CAACACGGCC ACGCCGCTGG ACGTGGTGAG CAACCCCAAG
AAGCTCAAGC TCGTGCCGCT CGACGCCGCC CAGCTGCCGC GCTCGCTCGA CGACCTGGCG
ATTGCCGCCA TCAACAACGA CTACGCCGAG AAGGCCGGCC TGTCGCTCAA CAAGGACGCT
GTGATCAAGG AGGCCGCGAA GAGCCCCTAT GCCAACCTGA TCGCCGTGCG CCGCGCCGAC
AAGGACAAGC CCTGGGCCAG GCGGCTGGTG GCGGCCTACC AGTCGCCGGA GGTGAGGAGC
TTCATCGAGA CGCAGTTCAA GGGGTCGCTG GTGCCCGCGT TCTGA
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| Protein sequence | MQNLFRRRSL VLATLAASLI FCGSAAFAQD NGNKNTVKVG ISVGSAEQVF EVVKKVAAKD
GLNIQLVVFN DYQLPNAALA SGDLDANAFQ HQPFLDNQNK ARGFDIVPVG LTITAPLGFY
SRKIKSIDQL PDGAAVGIQN DPSNGNRALL LLQSAGLITL KPEAVKNNTA TPLDVVSNPK
KLKLVPLDAA QLPRSLDDLA IAAINNDYAE KAGLSLNKDA VIKEAAKSPY ANLIAVRRAD
KDKPWARRLV AAYQSPEVRS FIETQFKGSL VPAF
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