Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3741 |
Symbol | |
ID | 7970898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3939045 |
End bp | 3941216 |
Gene Length | 2172 bp |
Protein Length | 723 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644794325 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_002945623 |
Protein GI | 239816713 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.433802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCCCC TGCCCCGACC CCGCCTGCTG AGCGCCGCGC TTGCCTCGGC CTTCGGAACC GCCTGCACCC TGTGGGCGGC CCCCGCCTTC TCGCAGGACA GCAGCAACCT GCCGGCGGTG ACCGTCACGG CCGATACGGA AGCGTCGGCC AAGGGCCATG TGAACGGCTA TGTGGCCAAG CGCAGCGCCA CCGGCACCAA GACCGACACC CCGATCCTGG AAACCCCCCA GTCGATCTCG GTGGTCACGG CCGACCGCGT GGCCGCCATC GGCGCCACCA CCGTGAAGGA CGCGCTGGGC TACACCCCCG GCGTCACCAC CACCGTCTTC GGCGCCGACT CGCGCTACGA CTGGATCTCG ATCCGCGGCT TCGACGGCTA CGCGCCGGGC TTCTACCTGG ACGGCATGCC CCTGCGCAAC AACGGCAACT GGGGCGTCTG GCAGATCGAG CCCTACGGCA TGGAGCGCAT CGAAGTGCTG CGCGGACCGG CCTCGGTGCT CTACGGCCAG GCCAGCCCCG GCGGCGTGGT CAACGTCGTG AGCAAGCGCC CCACCACCGA GCCGCTGCGC GAAGTGCAGC TGCAACTGGG CAGCAACAAC CGCACCCAGA TCGCCGCCGA CTTCTCCGGC CCCATCGATG CCGAGGGCAA GCTCAGCTAC CGCCTGACGG CCGTGGGCCG CGACAGCAAG CTGCCGGCCG CCAGCATGGA CGACGACCGC TTCTACATCG CGCCCTCGCT CACCTGGCGC CCCTCGGCGG ACACCAGGCT CACGCTGCTG TCGCACTTCA ACCGCGTGCG CGGCGGTGTG TACACGCGCG GGCGCCCGAC GGTGGGCTCG CTGGTTCCCA CGCGTTTCGG CAACTACATT CCCGACTCGC TCTTCGTGGG CGATCCCAAC TTCAACCACT TCGACGTGGA CCAGTGGATG GTCGGCTACG AGTTCGAGCA CCGCTTCAAC GACACCTTCA CCGCGCGCCA GAACCTGCGC TACGGCCGGC TGGACGTCGA CTACGGCGCC GTGCAGGGCC GCGCGATCGT GCCGATCAAC AGCAACGTCT CCGACCCGCG CAACTACCAG ATGCTGCGCC GGAGCATCTC GGGCAGCCGC GAGAGCGTCT CGACCTTCAC GCTGGACAAC CAGCTCGAAG CCAACTTCGT CTCGGGCGAC TGGAAGCACA AGGTGCTGAT CGGCCTGGAC CACCAGCGCA CCGGCATCGA GCAGGCCAGC TACAGCGGCG GCAGTGCGCC GAGCATCAAC ATCTACGCAC CCGTGTACGG CGGCCCGTTC TTCGTGCCCG CGCCCTATGT GGACGCCAAC ACCCGCCTGA CGCAGACCGG CCTGTACATC CAGGACCAGA TCAAGTGGGG CGAGCGTTGG AGCCTCACGC TCGGCGGCCG CTACGACCGC GCCTCCACGG TCATCCATAG CAACCTGGAC GGCACGCGCA GCGACATCCC CGAGCACAAG TTCACCAAGC GCGGCGGCCT GGTCTACACC TTCCCGAGCG GCTGGGCACC CTACCTGAGC TACTCCGAAT CGTTCTCGCC CTCGGCGCGC CTGAACCCGG ACACCCAGAG CCCGTTCAAG CCCGAGACCG GCCGCCAGTA CGAAGCCGGC GTGCGTTACC AACCCGTGGG CACCACCGAC AGCTACAGCG CCGCCCTCTT CGACCTGCGC CGCCAGAACT ACATCACGGC CGACGCCAAC TTCCGCCCGC GCCAGACCGG CGAGGTGCTG GTGCGCGGCC TGGAGCTCGA GGCGGCCTTC CAGCCCGTCA AGCGCATGAA CGTGACGGTG TCCTACGCCT ACACGCCCAA GGTCGAGATC ACGGCCAGCA GCACGCCGAG CGAAATCGGC ACGCCGCTGC TCGCGGTGTC CAGGCACCGC GCCGCGCTCT GGGCGGACTA CCGCTTCGAC AACGGCATCA AGGTCGGCCT GGGCGCGCGC TTCACCGGCT CGAACCGCGG CGACCTGAAC AAGGCGCCGG TCCAGGTGCC TTCGTACACC GTGTTCGACG CAATGATCGG CTATGACATC GACCGCTGGA GCCTTGCGCT GAACGTGCGC AACCTGGCCG ACAAGACCTA CTTCGCGAAC TGCGACCAGT ACGGCAACTG CTACTACGGC GACCAGCGCA AGGTCACGGC CACGGCCACC TACCGCTGGT AG
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Protein sequence | MRPLPRPRLL SAALASAFGT ACTLWAAPAF SQDSSNLPAV TVTADTEASA KGHVNGYVAK RSATGTKTDT PILETPQSIS VVTADRVAAI GATTVKDALG YTPGVTTTVF GADSRYDWIS IRGFDGYAPG FYLDGMPLRN NGNWGVWQIE PYGMERIEVL RGPASVLYGQ ASPGGVVNVV SKRPTTEPLR EVQLQLGSNN RTQIAADFSG PIDAEGKLSY RLTAVGRDSK LPAASMDDDR FYIAPSLTWR PSADTRLTLL SHFNRVRGGV YTRGRPTVGS LVPTRFGNYI PDSLFVGDPN FNHFDVDQWM VGYEFEHRFN DTFTARQNLR YGRLDVDYGA VQGRAIVPIN SNVSDPRNYQ MLRRSISGSR ESVSTFTLDN QLEANFVSGD WKHKVLIGLD HQRTGIEQAS YSGGSAPSIN IYAPVYGGPF FVPAPYVDAN TRLTQTGLYI QDQIKWGERW SLTLGGRYDR ASTVIHSNLD GTRSDIPEHK FTKRGGLVYT FPSGWAPYLS YSESFSPSAR LNPDTQSPFK PETGRQYEAG VRYQPVGTTD SYSAALFDLR RQNYITADAN FRPRQTGEVL VRGLELEAAF QPVKRMNVTV SYAYTPKVEI TASSTPSEIG TPLLAVSRHR AALWADYRFD NGIKVGLGAR FTGSNRGDLN KAPVQVPSYT VFDAMIGYDI DRWSLALNVR NLADKTYFAN CDQYGNCYYG DQRKVTATAT YRW
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