| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3666 |
|---|
| Symbol | |
|---|
| ID | 7973899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3867451 |
|---|
| End bp | 3868233 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794251 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | YP_002945549 |
|---|
| Protein GI | 239816639 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.216999 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAT CCGCATCCGA AATCAGTGCA CGCATCGTCG AGGCGGTGAT GGCGCAGAAG
CTCGCGCCGG GCTCGCGCCT GGGCGAGCAG CCGCTGGCCA TGCTGTTCGA CTGCAGCCGC
ACCATCGTGC GCGAGGCGCT CACCCGGCTG GCGGCGCGCG GCATCGTCAC GGTGAGTGCG
CGGCGCGGCT GGTTCGTGAT CGAGCCCTCG CAGGACGAGG CGCGCGAAGC CTTCGAGGCC
CGGCGTGTCA TCGAGCTCGG CCTCATCCGC AGCACGGGCA GCACCGGCAA GATCGACAAG
GCCGCGCTGC GCCAGCTGAA GGCGCACCTG CAGCGTGAAA AGGCCGCACT GAAAGAGAGC
GACGTCGGCA ACCGCAGCTT CCTGCTCGGC GACTTCCACG TGTGCCTGGC CGAATGCCTG
GGCAACACGC TCTTGGCCGA CACGCTGCGC GACTTCACCG CGCGCACCAC GTTGATCGCC
ATGCTCTACC AGTCCACGCA CGATGCCGTG CAGTCCTGCG AGGACCATGT GCAGATCGTC
GCCGCCCTCG AGCGGGGCGA CCACGCCGCC GCCGAGGCGC TGATGGCCGC GCACATCGGC
ACGGTGCAGT CGGCGCTGCG CGTGCAGGCG CCGACCGATC CGCTCGCGCA GTTGCGCGAT
GCGCTGGCGC CGCTGCAGCA GAAGAACAAG AAAACCGCCG CGGCCGTTCC CCGGCGGCGC
AAGGCCGCCG CGCCCTCCCC CGACGACACC GATTCATCGA CTTACCTAGG AGCCCTGCTA
TGA
|
|---|
| Protein sequence | MSTSASEISA RIVEAVMAQK LAPGSRLGEQ PLAMLFDCSR TIVREALTRL AARGIVTVSA
RRGWFVIEPS QDEAREAFEA RRVIELGLIR STGSTGKIDK AALRQLKAHL QREKAALKES
DVGNRSFLLG DFHVCLAECL GNTLLADTLR DFTARTTLIA MLYQSTHDAV QSCEDHVQIV
AALERGDHAA AEALMAAHIG TVQSALRVQA PTDPLAQLRD ALAPLQQKNK KTAAAVPRRR
KAAAPSPDDT DSSTYLGALL
|
|---|
| |