Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3621 |
Symbol | |
ID | 7970696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3830513 |
End bp | 3831715 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794206 |
Product | Rh family protein/ammonium transporter |
Protein accession | YP_002945504 |
Protein GI | 239816594 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0004] Ammonia permease |
TIGRFAM ID | [TIGR00836] ammonium transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGCAC TCAAACAGGG CGCAGACGCG CTGTTCATTC TTCTCGGCGC GATCATGGTG CTGGCCATGC ATGCCGGTTT CGCCTTCCTG GAACTGGGCA CCGTGCGCAA GAAGAACCAG GTCAATGCGC TGGTTAAGAT CCTGGTCGAC TTCTCGGTCT CGACCATCGT GTACTTTCTG GTGGGCTATG GCGTGGCCTA CGGCACCCAC TTCTTCGTGG GCGCCACCGA GCTCGCAGCA AAAAGCGGCT ACGAACTCGT GAAGTTCTTC TTCCTGCTCA CCTTCGCGGC GGCCATTCCG GCGATCATCT CGGGCGGGAT TGCCGAACGT GCCAAGTTCT GGCCGCAACT GATCGCTACC GCGGTCATCG TCGGCTTCGT CTATCCGCTG TACGAGGGCA TTGCCTGGAA CAAGGCCTTC GGCATCCAGG CCTGGATCGC TTCGGCCACG GGCAGCGAGT TCCATGACTT TGCCGGCTCG GTGGTGGTGC ACGCGGTGGG CGGCTGGCTC GCCTTGCCGG CCGTGCTGCT GCTGGGCGCG CGCCGCAACC GCTACCGCGG CGACGGCTCG CTGAGCGCGC ATCCGCCGTC GAACATTCCT TTTCTGGCGC TGGGGGCCTG GGTGCTGTGC GTCGGCTGGT TCGGCTTCAA CGTCATGAGC GCGCAGAGCA TCGACAAGAT CTCCGGCCTG GTGGCCGTCA ACTCGCTCAT GGCAATGGTC GGCGGCACGC TGGTTGCGCT GGCGCTGGGC AAGAACGACC CCGGCTTTGT CTACAACGGC CCGCTCGCCG GTCTCGTGGC CGTGTGCGCG GGGTCCGACC TGATGCATCC GCTGGGCGCG CTGGTGGTGG GCGGCGTGGC CGGGGCCATC TTCGTGGTGA TGTTCACGCT CACGCAGAAC AAATGGAAGA TCGACGACGT GCTCGGCGTC TGGCCGCTGC ACGGCCTGTG CGGCACCTGG GGCGGCATCG CGGCCGGCAT CTTCGGCACC CAGGCGCTCG GCGGCATCGG CGGCGTGAGC GTCTGGGCGC AGCTCATCGG CACCTTGATG GGCGTGGCGT GGGCGGCGCT GGCCGGAGCG GCGGTGTACG GCGCGCTCAA GGCGACGATG GGGCTGCGGC TCACGCAGGA AGAGGAATAC GACGGCGCCG ACCTGTCGAT CCACCACATC TCGGCGACGC CGGAGCGTGA GGTGAACTGG TAG
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Protein sequence | MDALKQGADA LFILLGAIMV LAMHAGFAFL ELGTVRKKNQ VNALVKILVD FSVSTIVYFL VGYGVAYGTH FFVGATELAA KSGYELVKFF FLLTFAAAIP AIISGGIAER AKFWPQLIAT AVIVGFVYPL YEGIAWNKAF GIQAWIASAT GSEFHDFAGS VVVHAVGGWL ALPAVLLLGA RRNRYRGDGS LSAHPPSNIP FLALGAWVLC VGWFGFNVMS AQSIDKISGL VAVNSLMAMV GGTLVALALG KNDPGFVYNG PLAGLVAVCA GSDLMHPLGA LVVGGVAGAI FVVMFTLTQN KWKIDDVLGV WPLHGLCGTW GGIAAGIFGT QALGGIGGVS VWAQLIGTLM GVAWAALAGA AVYGALKATM GLRLTQEEEY DGADLSIHHI SATPEREVNW
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