Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3608 |
Symbol | |
ID | 7970683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3819009 |
End bp | 3820346 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644794193 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_002945491 |
Protein GI | 239816581 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.704164 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCTC CGAACTCCGA GCCTTCTTCC GGCGATTCGC CTGCCGTCCC ACCGGCAACT CCCCCTTCTT CGTCTCCGCC TGCGCGGCCG CCCTCGCGCC GCAGGCTCTG GCTCGGCAGC CTGATCGCGC TGGTGCTGCT GCTGGTGCTG GGGGGCGGCG CCTGGTACCT CATCAACCGC AAGGGCAGCT CCGCCGGCGG GCCGGGCTTC GGCGGCGCGA CCGTCACGGT GGGCCACGCG GCGGCGCGCG AGATCGAATT GCCGGTGACC ATCGATGCGC TCGGCACGGT CACGCCGCTG GCCACCATCA CGCTCAAGGC GCAGGTCGGC GGCGTGCTGA CCGAGGTGCT GTTCACCGAA GGGCAGACTG TGGCAAGGAA CCAGCTGCTC GCGCGCATCG ATCCCAGGCC CTATGAGCAG GCGCTGATGC AGGCCCGCGG CACGCGCCAG CGCGACGAGG CGCAGCTCGA GGCCGCGCGC GTCACGCTCG CGCGCTACCG CACCCTGCTG GGGCAGGACT CCATCGCCCG GCAGGACGTC GACACCCAGG CCGCGCTGGT CCGCCAGCTC GAAGGCACGG TCACCACCGA CCTGGCCGCC GAGGCCGCCG CCAAGCTGAA CCTCGACTAC ACCCGCATCA CAGCGCCGGT GGCCGGCCGC ATCGGCCTGC GCGCGGTGGA TGCGGGCAAC ACCGTGACGG CCAACGCGAC CACGGGCATC GCGGTCATCA CGCAGATGAA CCCGATCGAC GTGCAGTTCT CGGTGCCGCA GGACCGCGTG CCCGACATCC AGGCGCAGCT GGCCAAGGGC GAGCCGCTGC CGGTCACGGC CTTCGACCGC ACCCGCGCCG CAACGCTCGA CACTGGCACC TTCTCCACGC TCGACAACGT GGTCGACACC ACCACCGGCA CGGTCAAGGC CAAGGCGCGC TTCGGCAATG CGCAGACCAC GCTGTTCCCG AGCCAGTTCG TCAATGTGCA GATGCTGCTG CGCAAGGTGC GCGCGGTGGT GGTGCCGGTG ACGGCGGTGC GCACCGGTCC CAACGGCGAC TACGTCTATG TGATCAACGA GGACCGCACG GTGTCGATGC GCGCGGTGAA ACGCGGCGAG GCCAACGTCG AGGTGGTGGC CATCACCTCG GGCCTGAAGG CGGGCGAGAA CGTGGTGACC GAGGGCGGCG ACCGCATCAA GGACGGCGCG GTCGTGCAGC TGCAGGGCGA CCGGCCCGCG GCAGGTCCGC GCGGCGGCGC TTCGGGGCCG CGCGGTGCGG CTTCGGGCCC GCGTGGGCAG CGCGGCGAAG GCAGTGGGGA GCGGCGGCGC CAGCGTCCGC CGCAATGA
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Protein sequence | MESPNSEPSS GDSPAVPPAT PPSSSPPARP PSRRRLWLGS LIALVLLLVL GGGAWYLINR KGSSAGGPGF GGATVTVGHA AAREIELPVT IDALGTVTPL ATITLKAQVG GVLTEVLFTE GQTVARNQLL ARIDPRPYEQ ALMQARGTRQ RDEAQLEAAR VTLARYRTLL GQDSIARQDV DTQAALVRQL EGTVTTDLAA EAAAKLNLDY TRITAPVAGR IGLRAVDAGN TVTANATTGI AVITQMNPID VQFSVPQDRV PDIQAQLAKG EPLPVTAFDR TRAATLDTGT FSTLDNVVDT TTGTVKAKAR FGNAQTTLFP SQFVNVQMLL RKVRAVVVPV TAVRTGPNGD YVYVINEDRT VSMRAVKRGE ANVEVVAITS GLKAGENVVT EGGDRIKDGA VVQLQGDRPA AGPRGGASGP RGAASGPRGQ RGEGSGERRR QRPPQ
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