| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3586 |
|---|
| Symbol | |
|---|
| ID | 7970661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3788377 |
|---|
| End bp | 3789216 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644794171 |
|---|
| Product | Siderophore-interacting protein |
|---|
| Protein accession | YP_002945469 |
|---|
| Protein GI | 239816559 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2375] Siderophore-interacting protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT TCACAACCAC TTCTGCTTCC ACCACACCCG ACCGCACGCC GCAACGCGTG
CGCCACGAGC TTCGCTTTCG CCAGCTCACG GTCAAGACCG TGCAGCGCGT GACACCGCAC
CTGATCCGCA TCACGCTGAC GGGCGACGAC CTCGCGGGCT TCACGAGCCC GGGTTTCGAC
GACCACGCCA AGATCTTTTT CCCCGATGCC GTGACCGGCC AGCTCACGCT GCCGACCGTG
GGGCCCGACG GCCCGGTGTG GCCCGCGAGC GGCCGGCCCA CCATGCGCGA CTACACGCCG
CGCCGTCACG ACGCCAGCGC CAACACGCTG GAGCTTGACT TCGCGCTGCA CGACGCCGGC
CCCGCCACGC AATGGGCCGA GCAGGCCAAG CCCGGCGATG TGCTCGGCGT GGGCGGCCCG
CGCGGCTCGT TCATCGTGCC GACGGCCTTC GACTGGCACC TGCTGATCGG CGACGACACC
GCCCTGCCCG CCATTGCGCG GCGCCTGGCC GAGCTGCCGG CCAGTGCCCG GGTGGTGGTG
CTGGCCGAGG TCGACAGCAA AGCCGACCAG GTTCCGTTCG AGACGAAGGC GCAACTCACG
CTGAAGTGGG TGCACCGCAA CGGCGCCGAA CCGGGCCTGA GCCCGGTGCT GATCGATGCG
CTGCGGGCCA TGGCGCTGCC GGCCGGCGAC TTCCACGCCT GGGTGGGCTG CGAATCGGCG
ATTGCGAAGG CCTTGCGCGC GCACCTCGTG GGCGAACGCG GCGCCAACCC CAAGTGGATT
CGCGCCTCGG GCTACTGGCG GCGCGGTGCG GTGGCCACGC ACGATACGCA CGACGAGTAA
|
|---|
| Protein sequence | MTDFTTTSAS TTPDRTPQRV RHELRFRQLT VKTVQRVTPH LIRITLTGDD LAGFTSPGFD
DHAKIFFPDA VTGQLTLPTV GPDGPVWPAS GRPTMRDYTP RRHDASANTL ELDFALHDAG
PATQWAEQAK PGDVLGVGGP RGSFIVPTAF DWHLLIGDDT ALPAIARRLA ELPASARVVV
LAEVDSKADQ VPFETKAQLT LKWVHRNGAE PGLSPVLIDA LRAMALPAGD FHAWVGCESA
IAKALRAHLV GERGANPKWI RASGYWRRGA VATHDTHDE
|
|---|
| |