| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3579 |
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| Symbol | |
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| ID | 7970654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3777679 |
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| End bp | 3781002 |
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| Gene Length | 3324 bp |
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| Protein Length | 1107 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794164 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002945462 |
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| Protein GI | 239816552 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.269581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCGT CCATCTGGGT CAGGATTCGC TTGCCGCTGG TGATTTTCGC GGCTGGCATG
GTGCTGTCGA TCGCCCTCGG CGTCTCCGCC CGCCAGGAGA TCGGGCGCAG CGCCCAGGCG
CGCTTCGACG CCACCGCCTT CGATCTGGCG CGCAAGGTCG AGGCCCGCTT CGATGACTAC
GTTGCCGTCC TGATCGGATT GCGTGCGCGA TTCAACACCT CCGAGACCGT GACGCGAAGC
GATTTCAGGG ACTACGTCGC GGGGCTGGAC CTGGCGCGCG CCTACCCCGG TTTCCAGGCC
GTCAACTATG CGCCCCGCAT CACGGTCAAC GACAGGCAGG CCTTCGAGGA ACAGGTCCGC
CGCGATGCCA GCCTCGACAC CGGCGTTGCC TCCAGCTTCG CCATCAAGCC GCCCGGTGAG
CGGGACACGT ACTACCCGCT GATCTACATC GAACCGCAGG CCGGCAACGA GAGGCTGCTC
GGCAATGACC TGGGCGCGAT GCCCGACAGG GGAGACGCGC TCGAGCAGGG GCGCGACACC
GGCGGGCTCG TCACGTCCGG CCGCAAGGTC CGCATCGCGG GCCGCGAGTC CGACATCGGA
TTGGCGATGC GGCTGCCGGT CTACCGCCCC GGGCAACCGC TCGATACGCT CGAACAGCGG
CGCAGTGCCT ATATCGGTTC GGTCGGCTCG GGCTTCAGCG TCGCAGGGAT GTTGAGCGAC
GTGGTGGGTA CCGACGCCAT GAGGACGCTC CGGTTGCGCC TGATCGATGC CGGGCCGAGC
CGGGGAGCGA TCGGGACACG GGTCGAGACC AGGTTCGTGA CGACGGCCTC GTTCGGCGAA
CGGCAATTGC TGTTCGACAG CGCGGCCCTG GCCAGGCCCG CTGCCGCACC TGCGCGCAGC
CTGGAGCGCA TGCTCGGCTT CGAGTTGGGC GGCCACTCCT GGCTCGTGGA AGTCGGCCAG
GACGAAAACC AGGTCTTCGG CCCGCTCGAC AAGGCGATCC CGTGGTTCAT CGTCCTTGGC
GGCCTGGCCA CCAGCATGCT GCTTGCCGGC ATCGTCTTTT CGTTGACCAC CGCACGCAGC
CGAGCCCAGA TCCTGGCGAA CGAGATGACC CGCCACCTGC GCACGAGCGA ACGGCAGCTG
GAGGAGGCCC AGCACCTGGC AAGCCTGGGC AGCTGGATCC TCGATCCCGA AACCGGAGCC
CTGCAGTGCT CCGAAGAAGC CCGGCGCATC CTGGGCTTCG AGGCCGGCCA CTTGCGGCCG
GAGCTGCCCG CGCTGCTCTC GCGTGTTCCG GCCGCAGAAC GCCCCGCGGT CGAACAGCAG
ATCGCGCAGG CCTCCCGGTC CATGGAACGC AGCGAATTCG AGCATCACCT GTGCCTGCCC
GACGGCACCG AGCGCTGGCT CCACGTCATC GCGCAGTCGG CCGAAGAAGA CGGAAAGACG
ATGGTGCGCG GCACCGTGCG CGACGCCACG CGGCCGCGCA AGGATGCGTT GCGCCAGGGG
CTCGAATACA GGATTGCCCG GCTGCTTGCC GGCGATGGCA GGGCCGAGAC GGTGATCACC
CAAGCGCTGG AAGCCCTGTG CACCGACCTG CGCTGGGACT GCGGCGCGTT GTGGAGCGTT
GGCGAGGACG GCGTGGTTCG CTGCGCCGCC GCCTGGCATG CCGACCACAT TCCCCCGGCG
GTGCGGCAAT TCGCCTCCGA CAGCCGGTCG TTCGAATACC GGGCCGACGA AGGCTCGCTG
GGCCGCGCCT GGAAAACCGG CGGCATCGTG CAAATCGACG TGCTGGCGGC TCCGGGCCAT
TTCGCGCGCG ATGCGATGGC CCGCGAGGCC GGGCTGGCCG TCGGCATCGT CGTGCCGATG
GCCGTTACCG ATTCGATCAC GGCGCTGGAG CTCCTTGGCT CCAATCCGTA CGCCATCGAC
GCCCAGACGC AGGAGTCGCT GCGTGTGATC GCCTTGCAGA TCGCCCAGTA CAAGCAGCGC
AAGCAGGCGG AGAGAAGCCT TCGTTTCATG GCCAGCCACG ACGGACTGAC CGGCCTGTTC
AACCGCGCTG CGCTGCAACA CGAGCTTGCT CGCGCCATCA AGCGCAGCAA CCGCCATCAA
AAGCAGTTCG CGGTGATATT CGTCGACCTG GATCGCTTCA AGCACATCAA CGACACGCTG
GGCCACGGCG TGGGCGACGA GATGATCAAG ATCTGCGGCG AGCGCCTCAC GGCGCTGCTG
CGCGAGGCGG ATGTCGTGGC GCGTTTCGGT GGCGATGAGT TCGTGCTGCT CCTGGAGAAC
CTGTCCAGCG CAAACGATGC CGCGGGGCTC GCCGAAAAAG TGCTGGCCTG CTGCGCCGAG
CCTTTCTTCC TCGCGGGGCG CGAACTGCAC GTCAGCGCCA GCGTCGGCGT GAGCATCTAT
CCGGACAACG GCGCAGACGC CGAAGCGCTC TTGAAAAATG CCGATACGGC GATGTACCGG
GCCAAGGAAA GAGGCCGCAA CACCTTCCGG TTCTACGCCG CGAAGATGAA TGCGCAGAAT
ACCGAACAGC TGATGCTCGA AAGCGCGCTG CGCCATGCCT TGGAGCGTGG CGAGCTCGAA
ATGCACTACC AGCCGAAGAT GGATCTGCAG ACCCAGCGCA TCGTCGGTGT CGAGGCGCTG
ATGCGCTGGC ACCATCCGAT CCTGGGCATG ATCCCGCCGG TGCAGTTCAT TCCAATCGCC
GAAGAACTCG GCCTGATCGT GTCCTTGGGC AAATGGGCGC TGGAGAGGGC TTGCGCCGAT
TCGCGTTCGT GGCAGAAATA CGGTTTGCCG AAGGTGTTGA TGAGCGTCAA TCTATCGCCG
CGCCAATTCG AAAGCCGCAC GCTCATCGCC GACATCCAGG CTGTCCTGGA AGCCTCGGGG
CTGGAGCCGT CGCTGCTGGA GCTGGAGATC ACCGAAGGCG CGGTGATGGC GAATCCCGAG
CATGCGGCGA AGTTGCTCAG GGCGATCCGG GACATGGGCG TCGGCCTTGC GATCGACGAT
TTCGGAACGG GCTATTCCTC GCTCTCCTAC CTCAAGCACT TCCCGCTGTC GACGGTCAAG
ATCGACCGCT CCTTCATCAA CGACCTGTCG CAGGACGCCG ACGCGCGGGC GCTCATCGAC
GGCATCATCA CCCTGGCCCA CGGGCTGCGG ATGAAAGTGG TCGCCGAGGG CATCGAGACC
ACGGCCCAGC TCGATTACCT GCGCAGCCAC GGTTGCGACG AGGCCCAGGG CTATTGGCTG
TGCAAGCCCG TGCCTGCCGA CGAGGTGCGC AATTTCATGG CGCGCCACCT GCGCAACCAG
TTTGCTCCAT CGGAGGCGGC CTGA
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| Protein sequence | MSSSIWVRIR LPLVIFAAGM VLSIALGVSA RQEIGRSAQA RFDATAFDLA RKVEARFDDY
VAVLIGLRAR FNTSETVTRS DFRDYVAGLD LARAYPGFQA VNYAPRITVN DRQAFEEQVR
RDASLDTGVA SSFAIKPPGE RDTYYPLIYI EPQAGNERLL GNDLGAMPDR GDALEQGRDT
GGLVTSGRKV RIAGRESDIG LAMRLPVYRP GQPLDTLEQR RSAYIGSVGS GFSVAGMLSD
VVGTDAMRTL RLRLIDAGPS RGAIGTRVET RFVTTASFGE RQLLFDSAAL ARPAAAPARS
LERMLGFELG GHSWLVEVGQ DENQVFGPLD KAIPWFIVLG GLATSMLLAG IVFSLTTARS
RAQILANEMT RHLRTSERQL EEAQHLASLG SWILDPETGA LQCSEEARRI LGFEAGHLRP
ELPALLSRVP AAERPAVEQQ IAQASRSMER SEFEHHLCLP DGTERWLHVI AQSAEEDGKT
MVRGTVRDAT RPRKDALRQG LEYRIARLLA GDGRAETVIT QALEALCTDL RWDCGALWSV
GEDGVVRCAA AWHADHIPPA VRQFASDSRS FEYRADEGSL GRAWKTGGIV QIDVLAAPGH
FARDAMAREA GLAVGIVVPM AVTDSITALE LLGSNPYAID AQTQESLRVI ALQIAQYKQR
KQAERSLRFM ASHDGLTGLF NRAALQHELA RAIKRSNRHQ KQFAVIFVDL DRFKHINDTL
GHGVGDEMIK ICGERLTALL READVVARFG GDEFVLLLEN LSSANDAAGL AEKVLACCAE
PFFLAGRELH VSASVGVSIY PDNGADAEAL LKNADTAMYR AKERGRNTFR FYAAKMNAQN
TEQLMLESAL RHALERGELE MHYQPKMDLQ TQRIVGVEAL MRWHHPILGM IPPVQFIPIA
EELGLIVSLG KWALERACAD SRSWQKYGLP KVLMSVNLSP RQFESRTLIA DIQAVLEASG
LEPSLLELEI TEGAVMANPE HAAKLLRAIR DMGVGLAIDD FGTGYSSLSY LKHFPLSTVK
IDRSFINDLS QDADARALID GIITLAHGLR MKVVAEGIET TAQLDYLRSH GCDEAQGYWL
CKPVPADEVR NFMARHLRNQ FAPSEAA
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