Gene Vapar_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3563 
Symbol 
ID7972189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3761741 
End bp3762214 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content67% 
IMG OID644794148 
Producttranscriptional regulator, MerR family 
Protein accessionYP_002945446 
Protein GI239816536 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID[TIGR02047] Cd(II)/Pb(II)-responsive transcriptional regulator 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCG GAGACCTGGC CAAGGCCGCG AACACGCCGG TCGAAACCAT CCGGTACTAC 
GAGCGCGAGC AGCTGCTGCC CGCGCCCGCG CGCACCGAAG GCAACTACCG CATCTACGAC 
GACGAGCATG CGCAGCGCCT GGGCTTCATC CGCCGCTGCC GTTCCCTGGA CATGACGCTC 
GACGAGATCC GCAACCTGCT CAGGTTCCGC GATGCGCCGG GCGAAGACTG CGGCGAGGTC 
AACCAGCTGC TCGACGACCA CATCGGCCAC GTGGCCGCGC GCATCCGCGA GCTCAAAACG 
CTGGAAAAGC AGCTGAAGGC GCTGCGCCAG CAATGCTGCG GGCCCGAATC AGCACGCAAC 
TGCGGCATCC TGCAGGAGCT GGACACCGCC GCGCCCGCGG CCGAGCCTTT CGGGCAGCAT 
GCGGGGCATG TGCATGGGTC GCTGCACAGC GCGTCCGCGA AGCGTTCGGC TTGA
 
Protein sequence
MKIGDLAKAA NTPVETIRYY EREQLLPAPA RTEGNYRIYD DEHAQRLGFI RRCRSLDMTL 
DEIRNLLRFR DAPGEDCGEV NQLLDDHIGH VAARIRELKT LEKQLKALRQ QCCGPESARN 
CGILQELDTA APAAEPFGQH AGHVHGSLHS ASAKRSA