| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3550 |
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| Symbol | |
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| ID | 7972176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3744866 |
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| End bp | 3745807 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794135 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002945433 |
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| Protein GI | 239816523 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.682713 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGAGC GCGCGAACCA CCTCGACTTC GACATCCGCT TCGAAGGCGC GCGCGACGTG
CTCGCGCGGC CGCACCGGCA CGAGTACTTC CAGATCCAGG TGAGCATCCA CGGCGGCTCG
CAACAGGTAG TTGGCGGCGC GGTGCGGCCG TTCACCGCGG GGCACCTGAG CTTCGTGCTG
CCCTACCGCG TGCACGTGGT GCCGCATCCG CCCGGCGCGC GCTATGCCAT CGTGAACTTC
GACCAGGGCT TTCTCTGGCC CGAACTCGCG GTCGAGGCGC TCGACCTGGA GGAGGTGCCG
GCCGCGCGCC AGCCGGAGCT CGCACCCTTC CTGTTCCAGG AATACATGGA CTTCCACTTC
GGCGATGCCG ATTTCGCGCG CATCCTCGGA TGGCTCGATG AGCTTGCCGC GCTGAACCGC
GAGCGGCGCT TCGGTGCCGT GGGTGCGATC CGCGGCATCC TGCTGCAGTT GATGGCGCTG
GCCTGCCACC GGCACGAGGC GCCGCTCCTC GCGCAGGCGG CGCTGCAGAG CGGCCGCAGC
GCGGGCCACG ATGCGCTGCA GCGCGTGATG CGCTACGTGC GCGAGCACCT GGCCGAGGAG
ATGTCGCTCA ACGACGCCGC GGCGGCCGCC ATGCTGTCGC CCAACTACCT CGCGCACCTG
CTCAAGAAGC AGACCCAGCG CACCTTCACC GAACTCGTGA CCGAGCGCCG CCTGGAGCGC
GCGAAGGAAC TGCTGGTGAC CTCGAACGCC CGCATCGGCG ACATCGCGCG GCAGTGCGGC
TTCGGCGACG CCGTGTACTT CAGCCGCCGC TTCAGGCTGC AGAGCGGCGT CACGCCGCGG
CAGTTCCGCA GCCAGGCGGA TGCCGGGCTG GCGGCGGCGG CGGCGCCGCC GGACCGGAGC
CGCCGGGCCG ACAGCCTCCC TTCACCGTCG CGTAAGTCCT AA
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| Protein sequence | MQERANHLDF DIRFEGARDV LARPHRHEYF QIQVSIHGGS QQVVGGAVRP FTAGHLSFVL
PYRVHVVPHP PGARYAIVNF DQGFLWPELA VEALDLEEVP AARQPELAPF LFQEYMDFHF
GDADFARILG WLDELAALNR ERRFGAVGAI RGILLQLMAL ACHRHEAPLL AQAALQSGRS
AGHDALQRVM RYVREHLAEE MSLNDAAAAA MLSPNYLAHL LKKQTQRTFT ELVTERRLER
AKELLVTSNA RIGDIARQCG FGDAVYFSRR FRLQSGVTPR QFRSQADAGL AAAAAPPDRS
RRADSLPSPS RKS
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