| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3533 |
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| Symbol | |
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| ID | 7972159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3728694 |
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| End bp | 3729812 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794118 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945416 |
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| Protein GI | 239816506 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.514268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCG CCGCCATCGC GCCCCCGCCC GCCGCCGTCG AGGTCGTCGC GCTCAGCAAG
CGCTATGCCG CGGGCACGCC CGCCGCCGTC GACCAGATCG ACCTGCGCAT CGCGAGCGGC
AGCTACTGCT GCCTGCTGGG CCCGTCGGGC TGCGGCAAGA GCACCACGCT GCGCATGATC
GCGGGCCATG AGTCGGTCAC GAGCGGCGAC ATCCTGCTGG ACAACCGCAA CATCACCAAC
CTGCCCGCGG CGGCGCGCGG CACCGCGATG ATGTTCCAGA GCTTCGCGCT GTTCCCGCAT
CTTTCGGCGC TGGACAACGT GGCCTTCAGC CTCAAGATGA AGGGCGTCGG CAAGGCCGAG
CGCCAGAAGC GCGCACGCGA ACTGCTCGAG CGCGTGGCAA TGGGCCACCT GGCCGAGCGC
AAGCCCGGCG AACTCTCCGG CGGCCAGCAG CAGCGCGTGG CGCTCGCGCG CGCGCTCATC
ACCGAGCCGC GCGTGCTGCT GCTCGACGAA CCGCTGTCGG CGCTCGATCC GTTCCTGCGT
ATCCAGATGC GCGCCGAACT GCGCCGCTGG CAGAAGGAAC TGGGGCTGAC CTTCGTGCAC
GTCACGCACT CGCAGGAAGA AGCGATGGCG CTGGCCGACA CCATGGTGGT CATGAACCAC
GGCGTGATCG AGCAGGTCGG CTCGCCGCAC CAGGTCTACA ACCATCCGGC GAGCGAATTC
GTGGCGCGCT TCATGGGCGG CCACAACGTG TTCGACACGC CCGCCGGCCA GGTCGCCGTG
CGCAACGACC ACATGCGGAT CGCCCGCGGC GATGCAGCCG GCGGCTTGGC CGCCACGGTC
ACCGACGTCG AATACCAGGG CACCTACGTG CTGCTCGGCC TCGCGCTGCA GGACGCCGCG
CCCGGCCGCG GCAGCGTCTC GGTGCTGCTG GGCGAAGCCG CCTTTCTTGC CAGCCCCCAT
GCGCCGGGCG ATGCGGTGCG CCTGTCCTGG GCCGAAGCCG ATGCGCGCGT GCTCGGCCCC
GGCGCCAAGC CGCCCGCCGA GCGCGTGCCG GTGCCGGCCG CGAGCGGCAG TCGCCCCGCA
CGCGACGACC TGGCCGCGCT CGCGAGCATG CCGCTGTGA
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| Protein sequence | MSAAAIAPPP AAVEVVALSK RYAAGTPAAV DQIDLRIASG SYCCLLGPSG CGKSTTLRMI
AGHESVTSGD ILLDNRNITN LPAAARGTAM MFQSFALFPH LSALDNVAFS LKMKGVGKAE
RQKRARELLE RVAMGHLAER KPGELSGGQQ QRVALARALI TEPRVLLLDE PLSALDPFLR
IQMRAELRRW QKELGLTFVH VTHSQEEAMA LADTMVVMNH GVIEQVGSPH QVYNHPASEF
VARFMGGHNV FDTPAGQVAV RNDHMRIARG DAAGGLAATV TDVEYQGTYV LLGLALQDAA
PGRGSVSVLL GEAAFLASPH APGDAVRLSW AEADARVLGP GAKPPAERVP VPAASGSRPA
RDDLAALASM PL
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