| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3529 |
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| Symbol | |
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| ID | 7972155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3723522 |
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| End bp | 3723980 |
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| Gene Length | 459 bp |
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| Protein Length | 152 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794114 |
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| Product | nitrite reductase (NAD(P)H), small subunit |
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| Protein accession | YP_002945412 |
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| Protein GI | 239816502 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.719582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACA ACAACAGCAA CCCCAACAAC AGCGGCAACG AGTGGCAGGT GATCTGCCGG
GTCGAGGACA TCCCGGTGCT GGGGGCGCGC CGCGTGGCAC GGCCGGTGGG CGTGGACGTG
GCGGTGTTCC GCAATGCCGA GGACCAGGTG TTCGCGCTGC TGGACCGCTG TCCGCACAAG
GGCGGGCCCT TGAGCCAGGG CATCGTGTTC GGCACCAGCG TGGCGTGTCC GCTGCACAAC
TGGGCCATCG GGCTGGACGA TGGGTGCGCC AAGTCGCCGG ATGAGGGGTG TACGCCGAGG
TTTGCGGTGA AGCTTGAAGA CGGCCAGGTC ATGATGAGCA TGGTCGAACT GAAGACGCAT
GCCCTCGACC TGGCACCGCC GCGCGCCGGC CCCGGCGCCG CCACGGCCGG CAAGCTGGGC
GACGAGACCT TCGACGTGCA GGCGCCGCAC GGCAGCTAG
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| Protein sequence | MSNNNSNPNN SGNEWQVICR VEDIPVLGAR RVARPVGVDV AVFRNAEDQV FALLDRCPHK
GGPLSQGIVF GTSVACPLHN WAIGLDDGCA KSPDEGCTPR FAVKLEDGQV MMSMVELKTH
ALDLAPPRAG PGAATAGKLG DETFDVQAPH GS
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