Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3528 |
Symbol | |
ID | 7972154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3721040 |
End bp | 3723502 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794113 |
Product | nitrite reductase (NAD(P)H), large subunit |
Protein accession | YP_002945411 |
Protein GI | 239816501 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAGA AACTCAAGCT CGTGATGGTC GGCAACGGCA TGGCCGGCGT GCGCACGCTC GAAGAGCTGC TGAAGCTCGC CCCCGACCTG TACGACATCA CCGTCTTCGG CGCCGAGCCG CACCCCAACT ACAACCGCAT CCTGCTGTCG CCCGTGCTCG CCGGCGAGCA GACCGTGGAC GAGATCGTCC TCAACAGCTG GGAGTGGTAC GCCGAGAACA AGATCACCCT GCACGCCGGC AAGAAGGTGG CCGAGGTCGA CCGCGTCAAG CGCATCGTGC GCGCCGAGGA TGGCACCGAG GCCCCCTACG ACCGCCTCCT CATGTGCACC GGCTCCAACC CCTTCATGCT CCCGGTGCCC GGCAAGGACC TGAAAGGCGT CATCGCCTAC CGCGACATCG CCGACACCGA CTACATGATC GAGACCGCGC GCACCCACAA GAGCGCCGTC GTCATCGGCG GCGGCCTGCT CGGGCTGGAA GCGGCCAACG GCCTGATGCT GCGCGGCATG GACGTCACCG TGGTGCACGT CATGCCCTGG CTGATGGAGC GCCAGCTGGA CGACGTGGCG GGCAAGCTGC TGCAGAAGTC GCTGGAGGAC CGGGGCCTGA AGTTCCTGAT CGGCGCCCAG ACCCAGGAAC TGGTGGGCAA TGACCAGGGC CGCGTGGCCG CCATCCGCTT CAAGGACGGC ACCGAGGTTC CCGCCGACCT GGTCGTCATG GCTGTGGGCA TCCGCCCCAA CACCGAACTG GCCGAGCGGA TGCGCCTGCA CTGCCACCGC GGCATCGTCG TCACCGACAC CATGCAGACC GTGACCGATG CGCGCATCTA CTCGGTGGGC GAATGCGCGG CCCACCGCGG CATCGCCTAC GGCCTGGTCG CCCCGCTCTT CGAGCAGGCC AAGGTCGCGG CCAACCACCT GGCCCAGTTC GGCATCGGGC GCTACCTGGG GTCCCTCACC TCCACCAAGC TCAAGGTCAC CGGCATCGAC CTGTTCTCGG CCGGCGAGTT CATGGGCGGC GAAGGCACGG AAGAGATCGT CATGAGCGAC CCCTTCGGCG GGGTCTACAA GAAGCTGGTC ATCAAGGACG ACAAGCTGGT GGGCGCGTGC CTGTACGGCG ACACGGTGGA CGGCAGCTGG TACTTCAAGC TCCTGCGCGA CGGGCGCAGC GTGCACGACA TCCGCGACAA GCTGATGTTC GGCGAATCCA ACATCGGCGA CACCGGCCAC GAGGGCCACA GCAAGGCCGC CGGCATGCCC GACGACGCCG AGGTGTGCGG CTGCAACGGC GTGACCAAGG GCACCATCTG CAAGGCCATC AAGGACAAGG GCCTGTTCAC CCTGGACGAG GTCAAGAAGC ACACCAAGGC CAGCGCCAGC TGCGGCTCGT GCACCGGCCT CGTGGAGCAG ATCCTGATGT TCACCGCCGG CGGCGACTAC TCGGCCACGC CCAAGAAGAA GGCCGTGTGC GGCTGCACCG ACGCGAACCA CCAGGACGTG CGCGACGCCA TCCGCCGCGA ACACTACCTG ACGCACGACG AGGTGTATCG CAACCTGGGC TGGCGCACGC CCAACGGCTG TGCCACCTGC CGCCCGGCCA TCAACTACTA CCTGATCAGC ACCTGGCCCA AGGAGGCCAA GGACGATCCG CAGAGCCGCT TCATCAACGA GCGCAGCCAC GCCAACATCC AGAAGGACGG CACCTATTCC GTCATCCCGC GGATGTGGGG CGGCCACACC ACGCCCGACG AGCTGCGCCG CATCGCGGAT GCGGCCGACA AGTACCAGAT CCCGACCGTC AAGGTCACGG GCGGCCAGCG CATCGACCTC TTGGGGGTGA AGAAGGAGGA CCTGGAGGGT GTGTGGAAGG ACATCGGCAT GCCCTCGGGC TTTGCCTATG CCAAGAGCCT GCGCACGGTG AAGACCTGCG TGGGCAGCGA GTGGTGCCGC TTCGGCACGC AAGATTCCAC CCAGATGGGC AAGGATCTGG AGCGGGCGCT GTGGGCGATG TATTCGCCGC ACAAGGTCAA GCTCGCGGTC TCGGGCTGTC CGCGCAACTG CGCCGAGGCC GGGATCAAGG ACGTGGGGGT GATCGGGGTG GATTCGGGCT GGGAGCTGTA CGTGGGGGGC AACGGCGGCA TCAAGACCGA GGTGGCGCAG TTCCTGGTGA AGGTGAAGAC GGCCGCCGAG GTGATGGAGT ATTCGGGCGC CTTCCTGCAG CTGTACCGCG AGGAAGGCTG GTACCTGGAG CGCACGGTGC ACTACATCGG GCGGGTGGGG CTGGACCATG TGAAGAAGAA GATCCTGGAG GACACCGAAG GCCGCAAGGC GCTGTGGGAG CGGCTGCAGT TCGCGCTGGA TGGGGAGCCC GATCCGTGGT TCGAGTCGAG CCAGGCGTCG GTGGACGTGC GGCAGTTCAC GCCGGTGGCG GTGGTGGATG ACAAGGCGAG CCAGGCGGCC TGA
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Protein sequence | MMKKLKLVMV GNGMAGVRTL EELLKLAPDL YDITVFGAEP HPNYNRILLS PVLAGEQTVD EIVLNSWEWY AENKITLHAG KKVAEVDRVK RIVRAEDGTE APYDRLLMCT GSNPFMLPVP GKDLKGVIAY RDIADTDYMI ETARTHKSAV VIGGGLLGLE AANGLMLRGM DVTVVHVMPW LMERQLDDVA GKLLQKSLED RGLKFLIGAQ TQELVGNDQG RVAAIRFKDG TEVPADLVVM AVGIRPNTEL AERMRLHCHR GIVVTDTMQT VTDARIYSVG ECAAHRGIAY GLVAPLFEQA KVAANHLAQF GIGRYLGSLT STKLKVTGID LFSAGEFMGG EGTEEIVMSD PFGGVYKKLV IKDDKLVGAC LYGDTVDGSW YFKLLRDGRS VHDIRDKLMF GESNIGDTGH EGHSKAAGMP DDAEVCGCNG VTKGTICKAI KDKGLFTLDE VKKHTKASAS CGSCTGLVEQ ILMFTAGGDY SATPKKKAVC GCTDANHQDV RDAIRREHYL THDEVYRNLG WRTPNGCATC RPAINYYLIS TWPKEAKDDP QSRFINERSH ANIQKDGTYS VIPRMWGGHT TPDELRRIAD AADKYQIPTV KVTGGQRIDL LGVKKEDLEG VWKDIGMPSG FAYAKSLRTV KTCVGSEWCR FGTQDSTQMG KDLERALWAM YSPHKVKLAV SGCPRNCAEA GIKDVGVIGV DSGWELYVGG NGGIKTEVAQ FLVKVKTAAE VMEYSGAFLQ LYREEGWYLE RTVHYIGRVG LDHVKKKILE DTEGRKALWE RLQFALDGEP DPWFESSQAS VDVRQFTPVA VVDDKASQAA
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