Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3526 |
Symbol | |
ID | 7972152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3717984 |
End bp | 3719249 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644794111 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002945409 |
Protein GI | 239816499 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2223] Nitrate/nitrite transporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAGCT TCAAGACCTT TCTGCATTCC GGCCACGGGC CGACGCTGTT TGCGTCCTTC CTGTACTTCT CGTTCTCGTG CTGCATCTGG GTGCTCAACG GTGCGATGGC GCCCTTCATC GGCGAGAGCT TCGACCTCTC GCCCGCGCAG AAGGGGCTGA TGCTGTCGGT GCCCATCATC GCGGGCGCGC TGATGCGCTT TCCGCTCGGC ATCCTGTCGC AGTACATCGG CCGCAAGAAC GCGACGCTGG TCGAGATGGG CCTGATCGCG GTGGCGATGC TGTTCGGTTT CTTCTTCGTG AAGAGCTTCA ACGACCTGCT CGCCATGGGC GTGCTGCTGG GCATTGCGGG CGCGAGCTTC GGCGTGGCGC TGTCGCTGGG CTCGGGCTGG TTCCCGCCGC AGCACAAGGG CCTGGCAATG GGCCTGGTGG GCGCCGGCAA CGTGGGCACG GCGGTGTCGG TGCTGGTGGC GCCGCCGCTC GCGCAGTGGC TCGGCTGGCA GGCGGTGTAC GGCGTGGCGG CCGGCGCAAT CCTCGTGCCG ATGATCGTGA TGATCGTGTT CGCCAAGGAG CCGCCCGACG TCGACAGCCA TGCGAGCTTC CGCGCGCACA TCGCCTGCCT GTTCGAGAAG GACGGCTGGG TGTTCAGCCT GATCTACGGC GTGACCTTCG GCGGCTTCAT CGGGCTCACC ACCTTCCTGC CTTCCTACTA CTACGACCAG TTCGGCGTGA GCAAGGTGCA GGCCGGCCAG CTCACGATGC TGGCCGCCTT CATGGGCGCG GCGGTTCGCA TCGTGGGCGG CTGGATCTCC GACCGCTGGG GCGGCGTCAA CACGCTGACC GTGGTGCTGC TGGTGGTGGC CGTCGGGCTG GTGCTGGTGG GCATCTCGTC GGGCTCGCTC GCGCTCACCA CCCTGCTGCT GATCCTGTGC TTTGCCGCGC TGGGCGCAGG CAACGGCGCG CTGTTCCAGT TGGTGCCGCT GCGCTGGCCC ACGAGCACCG CGGTGGCCGG CTCGATGATC GGCGAGATCG GCGCGCTGGG CGGCGGGCTG GTGCCCAACG CCATGGGCCT GTCGAAGCAG TACCTGGGCA GCTACGTCTG GGGCTTTGTG TTCTTCGGTG CGCTGTCGCT GGTGATGCTG GGCGTCATGC GCGTGATGCA GATCCGCTGG ACGCGCACCT GGGCAGAGAA AGGTGGCCGC GCGCGCACCT CGCCCCACGC TGCCGACGCC AAGTACGTGC CTCCAAGGAA GACGGCGCGG CCATGA
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Protein sequence | MSSFKTFLHS GHGPTLFASF LYFSFSCCIW VLNGAMAPFI GESFDLSPAQ KGLMLSVPII AGALMRFPLG ILSQYIGRKN ATLVEMGLIA VAMLFGFFFV KSFNDLLAMG VLLGIAGASF GVALSLGSGW FPPQHKGLAM GLVGAGNVGT AVSVLVAPPL AQWLGWQAVY GVAAGAILVP MIVMIVFAKE PPDVDSHASF RAHIACLFEK DGWVFSLIYG VTFGGFIGLT TFLPSYYYDQ FGVSKVQAGQ LTMLAAFMGA AVRIVGGWIS DRWGGVNTLT VVLLVVAVGL VLVGISSGSL ALTTLLLILC FAALGAGNGA LFQLVPLRWP TSTAVAGSMI GEIGALGGGL VPNAMGLSKQ YLGSYVWGFV FFGALSLVML GVMRVMQIRW TRTWAEKGGR ARTSPHAADA KYVPPRKTAR P
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